Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.19
PDLIM3Q53GG5 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
PDLIM3Q53GG5 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC16.27■□□□□ 0.19
PDLIM3Q53GG5 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
PDLIM3Q53GG5 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
PDLIM3Q53GG5 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
PDLIM3Q53GG5 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
PDLIM3Q53GG5 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
PDLIM3Q53GG5 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PDLIM3Q53GG5 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PDLIM3Q53GG5 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC16.26■□□□□ 0.19
PDLIM3Q53GG5 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
PDLIM3Q53GG5 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC16.26■□□□□ 0.19
PDLIM3Q53GG5 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PDLIM3Q53GG5 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC16.26■□□□□ 0.19
PDLIM3Q53GG5 MKRN4P-201ENST00000444706 1521 ntBASIC16.26■□□□□ 0.19
PDLIM3Q53GG5 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PDLIM3Q53GG5 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PDLIM3Q53GG5 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PDLIM3Q53GG5 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
PDLIM3Q53GG5 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC16.26■□□□□ 0.19
PDLIM3Q53GG5 CNN2P6-201ENST00000439038 900 ntBASIC16.26■□□□□ 0.19
PDLIM3Q53GG5 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC16.26■□□□□ 0.19
PDLIM3Q53GG5 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PDLIM3Q53GG5 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC16.26■□□□□ 0.19
PDLIM3Q53GG5 RPS20-210ENST00000523936 899 ntTSL 2 BASIC16.26■□□□□ 0.19
PDLIM3Q53GG5 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC16.26■□□□□ 0.19
PDLIM3Q53GG5 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
PDLIM3Q53GG5 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
PDLIM3Q53GG5 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PDLIM3Q53GG5 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
PDLIM3Q53GG5 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PDLIM3Q53GG5 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PDLIM3Q53GG5 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC16.26■□□□□ 0.19
PDLIM3Q53GG5 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
PDLIM3Q53GG5 AC087289.5-201ENST00000586076 3175 ntBASIC16.26■□□□□ 0.19
PDLIM3Q53GG5 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
PDLIM3Q53GG5 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC16.26■□□□□ 0.19
PDLIM3Q53GG5 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC16.26■□□□□ 0.19
PDLIM3Q53GG5 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PDLIM3Q53GG5 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC16.25■□□□□ 0.19
PDLIM3Q53GG5 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC16.25■□□□□ 0.19
PDLIM3Q53GG5 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PDLIM3Q53GG5 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PDLIM3Q53GG5 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PDLIM3Q53GG5 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
PDLIM3Q53GG5 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
PDLIM3Q53GG5 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC16.25■□□□□ 0.19
PDLIM3Q53GG5 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC16.25■□□□□ 0.19
PDLIM3Q53GG5 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PDLIM3Q53GG5 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC16.25■□□□□ 0.19
PDLIM3Q53GG5 AC104187.1-201ENST00000607510 612 ntBASIC16.25■□□□□ 0.19
PDLIM3Q53GG5 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
PDLIM3Q53GG5 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
PDLIM3Q53GG5 KRT8P36-201ENST00000489121 1440 ntBASIC16.25■□□□□ 0.19
PDLIM3Q53GG5 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC16.25■□□□□ 0.19
PDLIM3Q53GG5 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PDLIM3Q53GG5 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PDLIM3Q53GG5 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PDLIM3Q53GG5 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PDLIM3Q53GG5 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
PDLIM3Q53GG5 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
PDLIM3Q53GG5 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC16.25■□□□□ 0.19
PDLIM3Q53GG5 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC16.24■□□□□ 0.19
PDLIM3Q53GG5 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PDLIM3Q53GG5 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PDLIM3Q53GG5 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC16.24■□□□□ 0.19
PDLIM3Q53GG5 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PDLIM3Q53GG5 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PDLIM3Q53GG5 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
PDLIM3Q53GG5 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
PDLIM3Q53GG5 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
PDLIM3Q53GG5 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PDLIM3Q53GG5 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC16.24■□□□□ 0.19
PDLIM3Q53GG5 BET1L-204ENST00000410108 637 ntTSL 3 BASIC16.24■□□□□ 0.19
PDLIM3Q53GG5 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PDLIM3Q53GG5 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC16.24■□□□□ 0.19
PDLIM3Q53GG5 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PDLIM3Q53GG5 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PDLIM3Q53GG5 WDR88-203ENST00000592765 651 ntTSL 5 BASIC16.24■□□□□ 0.19
PDLIM3Q53GG5 AC243732.1-201ENST00000612648 864 ntBASIC16.24■□□□□ 0.19
PDLIM3Q53GG5 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PDLIM3Q53GG5 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PDLIM3Q53GG5 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PDLIM3Q53GG5 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PDLIM3Q53GG5 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC16.24■□□□□ 0.19
PDLIM3Q53GG5 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC16.24■□□□□ 0.19
PDLIM3Q53GG5 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
PDLIM3Q53GG5 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PDLIM3Q53GG5 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC16.24■□□□□ 0.19
PDLIM3Q53GG5 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
PDLIM3Q53GG5 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PDLIM3Q53GG5 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PDLIM3Q53GG5 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC16.23■□□□□ 0.19
PDLIM3Q53GG5 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC16.23■□□□□ 0.19
PDLIM3Q53GG5 BX323043.1-201ENST00000641006 1765 ntBASIC16.23■□□□□ 0.19
PDLIM3Q53GG5 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PDLIM3Q53GG5 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC16.23■□□□□ 0.19
PDLIM3Q53GG5 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PDLIM3Q53GG5 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms