Protein–RNA interactions for Protein: P56159

GFRA1, GDNF family receptor alpha-1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA1P56159 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
GFRA1P56159 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC17.67■□□□□ 0.42
GFRA1P56159 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
GFRA1P56159 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC17.67■□□□□ 0.42
GFRA1P56159 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
GFRA1P56159 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
GFRA1P56159 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
GFRA1P56159 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
GFRA1P56159 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC17.66■□□□□ 0.42
GFRA1P56159 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC17.66■□□□□ 0.42
GFRA1P56159 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC17.66■□□□□ 0.42
GFRA1P56159 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
GFRA1P56159 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
GFRA1P56159 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
GFRA1P56159 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
GFRA1P56159 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
GFRA1P56159 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC17.66■□□□□ 0.42
GFRA1P56159 PENK-204ENST00000518770 863 ntTSL 2 BASIC17.66■□□□□ 0.42
GFRA1P56159 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC17.66■□□□□ 0.42
GFRA1P56159 GRAP-204ENST00000573099 846 ntTSL 3 BASIC17.66■□□□□ 0.42
GFRA1P56159 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
GFRA1P56159 CD177P1-201ENST00000606252 935 ntBASIC17.66■□□□□ 0.42
GFRA1P56159 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
GFRA1P56159 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
GFRA1P56159 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
GFRA1P56159 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
GFRA1P56159 PKD1P6-201ENST00000343738 4769 ntBASIC17.66■□□□□ 0.42
GFRA1P56159 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
GFRA1P56159 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
GFRA1P56159 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
GFRA1P56159 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
GFRA1P56159 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
GFRA1P56159 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
GFRA1P56159 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
GFRA1P56159 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC17.65■□□□□ 0.42
GFRA1P56159 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
GFRA1P56159 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
GFRA1P56159 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC17.65■□□□□ 0.42
GFRA1P56159 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
GFRA1P56159 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
GFRA1P56159 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC17.65■□□□□ 0.42
GFRA1P56159 KSR1P1-201ENST00000446298 240 ntBASIC17.65■□□□□ 0.42
GFRA1P56159 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC17.65■□□□□ 0.42
GFRA1P56159 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC17.65■□□□□ 0.42
GFRA1P56159 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC17.65■□□□□ 0.42
GFRA1P56159 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC17.65■□□□□ 0.42
GFRA1P56159 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
GFRA1P56159 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
GFRA1P56159 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
GFRA1P56159 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
GFRA1P56159 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
GFRA1P56159 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
GFRA1P56159 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
GFRA1P56159 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
GFRA1P56159 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC17.64■□□□□ 0.42
GFRA1P56159 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
GFRA1P56159 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC17.64■□□□□ 0.42
GFRA1P56159 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC17.64■□□□□ 0.41
GFRA1P56159 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
GFRA1P56159 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
GFRA1P56159 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
GFRA1P56159 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC17.64■□□□□ 0.41
GFRA1P56159 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC17.64■□□□□ 0.41
GFRA1P56159 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC17.64■□□□□ 0.41
GFRA1P56159 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC17.64■□□□□ 0.41
GFRA1P56159 DHDH-203ENST00000522614 776 ntTSL 5 BASIC17.64■□□□□ 0.41
GFRA1P56159 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC17.64■□□□□ 0.41
GFRA1P56159 MIR4785-201ENST00000585005 73 ntBASIC17.64■□□□□ 0.41
GFRA1P56159 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC17.64■□□□□ 0.41
GFRA1P56159 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC17.64■□□□□ 0.41
GFRA1P56159 KRT17P2-201ENST00000300992 1314 ntBASIC17.64■□□□□ 0.41
GFRA1P56159 SRI-203ENST00000419179 1307 ntTSL 2 BASIC17.64■□□□□ 0.41
GFRA1P56159 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
GFRA1P56159 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC17.64■□□□□ 0.41
GFRA1P56159 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
GFRA1P56159 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
GFRA1P56159 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
GFRA1P56159 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC17.63■□□□□ 0.41
GFRA1P56159 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
GFRA1P56159 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
GFRA1P56159 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
GFRA1P56159 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
GFRA1P56159 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
GFRA1P56159 FAM197Y1-201ENST00000421178 764 ntBASIC17.63■□□□□ 0.41
GFRA1P56159 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
GFRA1P56159 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
GFRA1P56159 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
GFRA1P56159 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC17.63■□□□□ 0.41
GFRA1P56159 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC17.63■□□□□ 0.41
GFRA1P56159 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC17.63■□□□□ 0.41
GFRA1P56159 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
GFRA1P56159 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
GFRA1P56159 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
GFRA1P56159 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
GFRA1P56159 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
GFRA1P56159 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
GFRA1P56159 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
GFRA1P56159 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC17.63■□□□□ 0.41
GFRA1P56159 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
GFRA1P56159 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms