Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
HMGCS2P54868 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
HMGCS2P54868 MFAP1P1-201ENST00000442257 1255 ntBASIC22.78■■□□□ 1.24
HMGCS2P54868 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC22.78■■□□□ 1.24
HMGCS2P54868 LTBR-211ENST00000543190 785 ntTSL 3 BASIC22.78■■□□□ 1.24
HMGCS2P54868 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC22.78■■□□□ 1.24
HMGCS2P54868 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC22.78■■□□□ 1.24
HMGCS2P54868 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC22.78■■□□□ 1.24
HMGCS2P54868 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC22.78■■□□□ 1.24
HMGCS2P54868 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC22.78■■□□□ 1.24
HMGCS2P54868 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC22.78■■□□□ 1.24
HMGCS2P54868 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
HMGCS2P54868 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC22.78■■□□□ 1.24
HMGCS2P54868 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC22.77■■□□□ 1.24
HMGCS2P54868 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
HMGCS2P54868 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC22.77■■□□□ 1.24
HMGCS2P54868 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC22.77■■□□□ 1.24
HMGCS2P54868 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
HMGCS2P54868 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
HMGCS2P54868 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC22.77■■□□□ 1.24
HMGCS2P54868 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC22.77■■□□□ 1.24
HMGCS2P54868 AK4P3-201ENST00000418260 669 ntBASIC22.77■■□□□ 1.24
HMGCS2P54868 PTPA-216ENST00000432651 857 ntTSL 2 BASIC22.77■■□□□ 1.24
HMGCS2P54868 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC22.77■■□□□ 1.24
HMGCS2P54868 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC22.77■■□□□ 1.24
HMGCS2P54868 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC22.77■■□□□ 1.24
HMGCS2P54868 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC22.77■■□□□ 1.24
HMGCS2P54868 TMEM179-206ENST00000616017 1645 ntBASIC22.77■■□□□ 1.24
HMGCS2P54868 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC22.77■■□□□ 1.24
HMGCS2P54868 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
HMGCS2P54868 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC22.76■■□□□ 1.23
HMGCS2P54868 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC22.76■■□□□ 1.23
HMGCS2P54868 GUK1-204ENST00000366721 689 ntTSL 3 BASIC22.76■■□□□ 1.23
HMGCS2P54868 BX664615.1-201ENST00000443558 458 ntBASIC22.76■■□□□ 1.23
HMGCS2P54868 FAM207BP-201ENST00000447172 505 ntBASIC22.76■■□□□ 1.23
HMGCS2P54868 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC22.76■■□□□ 1.23
HMGCS2P54868 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC22.76■■□□□ 1.23
HMGCS2P54868 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC22.76■■□□□ 1.23
HMGCS2P54868 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC22.76■■□□□ 1.23
HMGCS2P54868 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
HMGCS2P54868 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
HMGCS2P54868 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC22.76■■□□□ 1.23
HMGCS2P54868 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC22.76■■□□□ 1.23
HMGCS2P54868 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC22.76■■□□□ 1.23
HMGCS2P54868 AC096733.2-201ENST00000609937 1394 ntBASIC22.76■■□□□ 1.23
HMGCS2P54868 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
HMGCS2P54868 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC22.75■■□□□ 1.23
HMGCS2P54868 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC22.75■■□□□ 1.23
HMGCS2P54868 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC22.75■■□□□ 1.23
HMGCS2P54868 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC22.75■■□□□ 1.23
HMGCS2P54868 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC22.75■■□□□ 1.23
HMGCS2P54868 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC22.75■■□□□ 1.23
HMGCS2P54868 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC22.75■■□□□ 1.23
HMGCS2P54868 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC22.75■■□□□ 1.23
HMGCS2P54868 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC22.75■■□□□ 1.23
HMGCS2P54868 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC22.75■■□□□ 1.23
HMGCS2P54868 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC22.75■■□□□ 1.23
HMGCS2P54868 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC22.75■■□□□ 1.23
HMGCS2P54868 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC22.75■■□□□ 1.23
HMGCS2P54868 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
HMGCS2P54868 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC22.75■■□□□ 1.23
HMGCS2P54868 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
HMGCS2P54868 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC22.75■■□□□ 1.23
HMGCS2P54868 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC22.75■■□□□ 1.23
HMGCS2P54868 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
HMGCS2P54868 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC22.74■■□□□ 1.23
HMGCS2P54868 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC22.74■■□□□ 1.23
HMGCS2P54868 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC22.74■■□□□ 1.23
HMGCS2P54868 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC22.74■■□□□ 1.23
HMGCS2P54868 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC22.74■■□□□ 1.23
HMGCS2P54868 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC22.74■■□□□ 1.23
HMGCS2P54868 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC22.74■■□□□ 1.23
HMGCS2P54868 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
HMGCS2P54868 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
HMGCS2P54868 HMGA1P5-201ENST00000412453 271 ntBASIC22.74■■□□□ 1.23
HMGCS2P54868 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC22.74■■□□□ 1.23
HMGCS2P54868 AC117947.1-201ENST00000427448 529 ntBASIC22.74■■□□□ 1.23
HMGCS2P54868 AC091390.4-202ENST00000476426 537 ntBASIC22.74■■□□□ 1.23
HMGCS2P54868 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC22.74■■□□□ 1.23
HMGCS2P54868 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC22.74■■□□□ 1.23
HMGCS2P54868 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC22.74■■□□□ 1.23
HMGCS2P54868 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC22.74■■□□□ 1.23
HMGCS2P54868 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
HMGCS2P54868 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
HMGCS2P54868 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC22.73■■□□□ 1.23
HMGCS2P54868 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
HMGCS2P54868 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC22.73■■□□□ 1.23
HMGCS2P54868 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC22.73■■□□□ 1.23
HMGCS2P54868 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
HMGCS2P54868 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC22.73■■□□□ 1.23
HMGCS2P54868 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC22.73■■□□□ 1.23
HMGCS2P54868 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC22.73■■□□□ 1.23
HMGCS2P54868 AC022616.7-201ENST00000525383 220 ntBASIC22.73■■□□□ 1.23
HMGCS2P54868 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC22.73■■□□□ 1.23
HMGCS2P54868 AC116562.4-202ENST00000641738 218 ntBASIC22.73■■□□□ 1.23
HMGCS2P54868 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
HMGCS2P54868 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC22.73■■□□□ 1.23
HMGCS2P54868 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC22.73■■□□□ 1.23
HMGCS2P54868 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
HMGCS2P54868 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms