Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC21.15■□□□□ 0.98
COL4A4P53420 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL4A4P53420 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL4A4P53420 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL4A4P53420 AC069148.1-201ENST00000608741 768 ntBASIC21.15■□□□□ 0.98
COL4A4P53420 AC083849.1-201ENST00000615227 514 ntBASIC21.15■□□□□ 0.98
COL4A4P53420 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL4A4P53420 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
COL4A4P53420 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
COL4A4P53420 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
COL4A4P53420 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
COL4A4P53420 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
COL4A4P53420 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
COL4A4P53420 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL4A4P53420 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL4A4P53420 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC21.14■□□□□ 0.97
COL4A4P53420 AL450487.1-201ENST00000426799 995 ntBASIC21.14■□□□□ 0.97
COL4A4P53420 FAM207BP-201ENST00000447172 505 ntBASIC21.14■□□□□ 0.97
COL4A4P53420 SLC25A1P4-201ENST00000567977 778 ntBASIC21.14■□□□□ 0.97
COL4A4P53420 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC21.14■□□□□ 0.97
COL4A4P53420 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC21.14■□□□□ 0.97
COL4A4P53420 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
COL4A4P53420 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC21.14■□□□□ 0.97
COL4A4P53420 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC21.14■□□□□ 0.97
COL4A4P53420 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL4A4P53420 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC21.14■□□□□ 0.97
COL4A4P53420 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC21.13■□□□□ 0.97
COL4A4P53420 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL4A4P53420 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL4A4P53420 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL4A4P53420 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC21.13■□□□□ 0.97
COL4A4P53420 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC21.13■□□□□ 0.97
COL4A4P53420 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC21.13■□□□□ 0.97
COL4A4P53420 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC21.13■□□□□ 0.97
COL4A4P53420 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC21.13■□□□□ 0.97
COL4A4P53420 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL4A4P53420 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL4A4P53420 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC21.13■□□□□ 0.97
COL4A4P53420 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC21.13■□□□□ 0.97
COL4A4P53420 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL4A4P53420 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
COL4A4P53420 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL4A4P53420 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
COL4A4P53420 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL4A4P53420 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC21.12■□□□□ 0.97
COL4A4P53420 FP700111.2-201ENST00000619190 1892 ntBASIC21.12■□□□□ 0.97
COL4A4P53420 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC21.12■□□□□ 0.97
COL4A4P53420 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL4A4P53420 CALM3-202ENST00000391918 702 ntTSL 2 BASIC21.12■□□□□ 0.97
COL4A4P53420 AC091390.4-202ENST00000476426 537 ntBASIC21.12■□□□□ 0.97
COL4A4P53420 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
COL4A4P53420 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC21.12■□□□□ 0.97
COL4A4P53420 AC116407.4-201ENST00000623319 1061 ntBASIC21.12■□□□□ 0.97
COL4A4P53420 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
COL4A4P53420 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC21.12■□□□□ 0.97
COL4A4P53420 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL4A4P53420 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL4A4P53420 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL4A4P53420 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC21.12■□□□□ 0.97
COL4A4P53420 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL4A4P53420 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC21.12■□□□□ 0.97
COL4A4P53420 AC073314.1-201ENST00000568729 2216 ntBASIC21.12■□□□□ 0.97
COL4A4P53420 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL4A4P53420 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
COL4A4P53420 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC21.12■□□□□ 0.97
COL4A4P53420 AC004980.1-204ENST00000429707 299 ntBASIC21.12■□□□□ 0.97
COL4A4P53420 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC21.12■□□□□ 0.97
COL4A4P53420 CLN6-204ENST00000564752 900 ntTSL 3 BASIC21.12■□□□□ 0.97
COL4A4P53420 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC21.12■□□□□ 0.97
COL4A4P53420 CLN6-214ENST00000636314 442 ntTSL 3 BASIC21.12■□□□□ 0.97
COL4A4P53420 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
COL4A4P53420 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
COL4A4P53420 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL4A4P53420 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC21.11■□□□□ 0.97
COL4A4P53420 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC21.11■□□□□ 0.97
COL4A4P53420 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC21.11■□□□□ 0.97
COL4A4P53420 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL4A4P53420 PCED1CP-201ENST00000419887 785 ntBASIC21.11■□□□□ 0.97
COL4A4P53420 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
COL4A4P53420 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC21.11■□□□□ 0.97
COL4A4P53420 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC21.11■□□□□ 0.97
COL4A4P53420 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
COL4A4P53420 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
COL4A4P53420 H19-201ENST00000411754 1788 ntTSL 5 BASIC21.11■□□□□ 0.97
COL4A4P53420 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL4A4P53420 AC005332.1-201ENST00000577698 1310 ntBASIC21.1■□□□□ 0.97
COL4A4P53420 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC21.1■□□□□ 0.97
COL4A4P53420 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
COL4A4P53420 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL4A4P53420 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL4A4P53420 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC21.1■□□□□ 0.97
COL4A4P53420 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC21.1■□□□□ 0.97
COL4A4P53420 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC21.1■□□□□ 0.97
COL4A4P53420 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL4A4P53420 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC21.1■□□□□ 0.97
COL4A4P53420 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL4A4P53420 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC21.1■□□□□ 0.97
COL4A4P53420 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
COL4A4P53420 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC21.09■□□□□ 0.97
COL4A4P53420 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms