Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
MSX2P35548 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
MSX2P35548 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC18.75■□□□□ 0.59
MSX2P35548 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
MSX2P35548 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC18.75■□□□□ 0.59
MSX2P35548 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC18.75■□□□□ 0.59
MSX2P35548 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC18.75■□□□□ 0.59
MSX2P35548 AL358852.1-201ENST00000623174 1268 ntBASIC18.75■□□□□ 0.59
MSX2P35548 AL136967.2-201ENST00000623968 743 ntBASIC18.75■□□□□ 0.59
MSX2P35548 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
MSX2P35548 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
MSX2P35548 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
MSX2P35548 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
MSX2P35548 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
MSX2P35548 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
MSX2P35548 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
MSX2P35548 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
MSX2P35548 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC18.75■□□□□ 0.59
MSX2P35548 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
MSX2P35548 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
MSX2P35548 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
MSX2P35548 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC18.74■□□□□ 0.59
MSX2P35548 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
MSX2P35548 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
MSX2P35548 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
MSX2P35548 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC18.74■□□□□ 0.59
MSX2P35548 USP49-202ENST00000373010 2446 ntTSL 5 BASIC18.74■□□□□ 0.59
MSX2P35548 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
MSX2P35548 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
MSX2P35548 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
MSX2P35548 LTB4R2-202ENST00000528054 3092 ntBASIC18.74■□□□□ 0.59
MSX2P35548 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
MSX2P35548 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
MSX2P35548 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
MSX2P35548 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
MSX2P35548 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
MSX2P35548 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC18.74■□□□□ 0.59
MSX2P35548 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
MSX2P35548 EDA-201ENST00000338901 1233 ntBASIC18.74■□□□□ 0.59
MSX2P35548 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
MSX2P35548 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC18.74■□□□□ 0.59
MSX2P35548 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC18.74■□□□□ 0.59
MSX2P35548 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC18.74■□□□□ 0.59
MSX2P35548 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC18.74■□□□□ 0.59
MSX2P35548 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
MSX2P35548 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
MSX2P35548 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
MSX2P35548 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
MSX2P35548 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
MSX2P35548 PTBP1P-201ENST00000554374 1601 ntBASIC18.74■□□□□ 0.59
MSX2P35548 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
MSX2P35548 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
MSX2P35548 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
MSX2P35548 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
MSX2P35548 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC18.73■□□□□ 0.59
MSX2P35548 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC18.73■□□□□ 0.59
MSX2P35548 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
MSX2P35548 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
MSX2P35548 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
MSX2P35548 AC138932.1-201ENST00000534164 6830 ntBASIC18.73■□□□□ 0.59
MSX2P35548 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
MSX2P35548 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
MSX2P35548 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC18.73■□□□□ 0.59
MSX2P35548 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
MSX2P35548 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC18.73■□□□□ 0.59
MSX2P35548 AC091305.1-201ENST00000479476 895 ntBASIC18.73■□□□□ 0.59
MSX2P35548 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC18.73■□□□□ 0.59
MSX2P35548 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC18.73■□□□□ 0.59
MSX2P35548 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC18.73■□□□□ 0.59
MSX2P35548 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC18.73■□□□□ 0.59
MSX2P35548 AL356652.1-201ENST00000615962 565 ntBASIC18.73■□□□□ 0.59
MSX2P35548 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
MSX2P35548 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
MSX2P35548 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
MSX2P35548 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
MSX2P35548 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
MSX2P35548 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
MSX2P35548 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC18.73■□□□□ 0.59
MSX2P35548 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
MSX2P35548 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
MSX2P35548 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
MSX2P35548 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
MSX2P35548 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC18.72■□□□□ 0.59
MSX2P35548 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
MSX2P35548 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
MSX2P35548 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC18.72■□□□□ 0.59
MSX2P35548 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
MSX2P35548 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC18.72■□□□□ 0.59
MSX2P35548 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC18.72■□□□□ 0.59
MSX2P35548 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC18.72■□□□□ 0.59
MSX2P35548 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC18.72■□□□□ 0.59
MSX2P35548 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC18.72■□□□□ 0.59
MSX2P35548 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
MSX2P35548 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC18.72■□□□□ 0.59
MSX2P35548 AC243732.1-201ENST00000612648 864 ntBASIC18.72■□□□□ 0.59
MSX2P35548 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC18.72■□□□□ 0.59
MSX2P35548 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
MSX2P35548 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
MSX2P35548 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
MSX2P35548 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms