Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC116351.2-201ENST00000606540 1585 ntBASIC19.57■□□□□ 0.72
MSH3P20585 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
MSH3P20585 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC19.57■□□□□ 0.72
MSH3P20585 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
MSH3P20585 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC19.57■□□□□ 0.72
MSH3P20585 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
MSH3P20585 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
MSH3P20585 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
MSH3P20585 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
MSH3P20585 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
MSH3P20585 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
MSH3P20585 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC19.57■□□□□ 0.72
MSH3P20585 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC19.57■□□□□ 0.72
MSH3P20585 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC19.57■□□□□ 0.72
MSH3P20585 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
MSH3P20585 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC19.57■□□□□ 0.72
MSH3P20585 PNN-205ENST00000556530 601 ntTSL 2 BASIC19.57■□□□□ 0.72
MSH3P20585 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC19.57■□□□□ 0.72
MSH3P20585 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
MSH3P20585 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
MSH3P20585 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
MSH3P20585 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
MSH3P20585 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
MSH3P20585 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
MSH3P20585 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
MSH3P20585 AP001271.2-201ENST00000624018 1556 ntBASIC19.57■□□□□ 0.72
MSH3P20585 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
MSH3P20585 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
MSH3P20585 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC19.56■□□□□ 0.72
MSH3P20585 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC19.56■□□□□ 0.72
MSH3P20585 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
MSH3P20585 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
MSH3P20585 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
MSH3P20585 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
MSH3P20585 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
MSH3P20585 ABHD17AP1-201ENST00000358206 933 ntBASIC19.56■□□□□ 0.72
MSH3P20585 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
MSH3P20585 BID-204ENST00000399767 2129 ntTSL 2 BASIC19.56■□□□□ 0.72
MSH3P20585 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
MSH3P20585 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC19.56■□□□□ 0.72
MSH3P20585 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
MSH3P20585 AC233263.1-201ENST00000578059 224 ntBASIC19.56■□□□□ 0.72
MSH3P20585 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC19.56■□□□□ 0.72
MSH3P20585 ITM2C-210ENST00000620962 501 ntBASIC19.56■□□□□ 0.72
MSH3P20585 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC19.56■□□□□ 0.72
MSH3P20585 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
MSH3P20585 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
MSH3P20585 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
MSH3P20585 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC19.55■□□□□ 0.72
MSH3P20585 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC19.55■□□□□ 0.72
MSH3P20585 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
MSH3P20585 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
MSH3P20585 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
MSH3P20585 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
MSH3P20585 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
MSH3P20585 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
MSH3P20585 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
MSH3P20585 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
MSH3P20585 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
MSH3P20585 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
MSH3P20585 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
MSH3P20585 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC19.55■□□□□ 0.72
MSH3P20585 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
MSH3P20585 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
MSH3P20585 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
MSH3P20585 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC19.55■□□□□ 0.72
MSH3P20585 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC19.55■□□□□ 0.72
MSH3P20585 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC19.55■□□□□ 0.72
MSH3P20585 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
MSH3P20585 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
MSH3P20585 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
MSH3P20585 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
MSH3P20585 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC19.55■□□□□ 0.72
MSH3P20585 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
MSH3P20585 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
MSH3P20585 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
MSH3P20585 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
MSH3P20585 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
MSH3P20585 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC19.54■□□□□ 0.72
MSH3P20585 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
MSH3P20585 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
MSH3P20585 AC007952.6-201ENST00000573168 2673 ntBASIC19.54■□□□□ 0.72
MSH3P20585 AC003957.1-201ENST00000625108 2673 ntBASIC19.54■□□□□ 0.72
MSH3P20585 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
MSH3P20585 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
MSH3P20585 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
MSH3P20585 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
MSH3P20585 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
MSH3P20585 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC19.54■□□□□ 0.72
MSH3P20585 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC19.54■□□□□ 0.72
MSH3P20585 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC19.54■□□□□ 0.72
MSH3P20585 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC19.54■□□□□ 0.72
MSH3P20585 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC19.54■□□□□ 0.72
MSH3P20585 AFG3L1P-217ENST00000557444 2447 ntBASIC19.54■□□□□ 0.72
MSH3P20585 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
MSH3P20585 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC19.54■□□□□ 0.72
MSH3P20585 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
MSH3P20585 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC19.54■□□□□ 0.72
MSH3P20585 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
MSH3P20585 PCDHAC2-203ENST00000615316 3011 ntBASIC19.54■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms