Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
TPM1P09493 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
TPM1P09493 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.06
TPM1P09493 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
TPM1P09493 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
TPM1P09493 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
TPM1P09493 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.06
TPM1P09493 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
TPM1P09493 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.06
TPM1P09493 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
TPM1P09493 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
TPM1P09493 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
TPM1P09493 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
TPM1P09493 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
TPM1P09493 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
TPM1P09493 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
TPM1P09493 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
TPM1P09493 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
TPM1P09493 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
TPM1P09493 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
TPM1P09493 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC21.64■■□□□ 1.05
TPM1P09493 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC21.64■■□□□ 1.05
TPM1P09493 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC21.64■■□□□ 1.05
TPM1P09493 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC21.64■■□□□ 1.05
TPM1P09493 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC21.64■■□□□ 1.05
TPM1P09493 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC21.64■■□□□ 1.05
TPM1P09493 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
TPM1P09493 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TPM1P09493 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
TPM1P09493 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC21.63■■□□□ 1.05
TPM1P09493 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC21.63■■□□□ 1.05
TPM1P09493 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
TPM1P09493 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TPM1P09493 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TPM1P09493 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TPM1P09493 AP001271.2-201ENST00000624018 1556 ntBASIC21.63■■□□□ 1.05
TPM1P09493 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
TPM1P09493 JTB-203ENST00000368589 1216 ntTSL 2 BASIC21.63■■□□□ 1.05
TPM1P09493 UBE2DNL-204ENST00000602536 740 ntBASIC21.63■■□□□ 1.05
TPM1P09493 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
TPM1P09493 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
TPM1P09493 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TPM1P09493 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TPM1P09493 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TPM1P09493 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC21.63■■□□□ 1.05
TPM1P09493 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC21.63■■□□□ 1.05
TPM1P09493 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
TPM1P09493 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC21.63■■□□□ 1.05
TPM1P09493 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC21.63■■□□□ 1.05
TPM1P09493 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
TPM1P09493 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
TPM1P09493 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
TPM1P09493 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
TPM1P09493 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC21.62■■□□□ 1.05
TPM1P09493 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
TPM1P09493 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
TPM1P09493 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
TPM1P09493 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC21.62■■□□□ 1.05
TPM1P09493 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
TPM1P09493 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
TPM1P09493 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC21.62■■□□□ 1.05
TPM1P09493 MYCNOS-205ENST00000641950 531 ntBASIC21.62■■□□□ 1.05
TPM1P09493 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
TPM1P09493 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
TPM1P09493 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC21.62■■□□□ 1.05
TPM1P09493 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
TPM1P09493 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
TPM1P09493 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
TPM1P09493 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC21.62■■□□□ 1.05
TPM1P09493 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
TPM1P09493 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
TPM1P09493 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
TPM1P09493 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
TPM1P09493 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC21.61■■□□□ 1.05
TPM1P09493 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC21.61■■□□□ 1.05
TPM1P09493 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC21.61■■□□□ 1.05
TPM1P09493 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
TPM1P09493 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC21.61■■□□□ 1.05
TPM1P09493 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
TPM1P09493 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
TPM1P09493 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
TPM1P09493 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
TPM1P09493 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
TPM1P09493 PBX1-209ENST00000485769 834 ntTSL 2 BASIC21.61■■□□□ 1.05
TPM1P09493 GALNS-213ENST00000569433 723 ntTSL 3 BASIC21.61■■□□□ 1.05
TPM1P09493 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC21.61■■□□□ 1.05
TPM1P09493 AL031963.3-201ENST00000606441 850 ntBASIC21.61■■□□□ 1.05
TPM1P09493 RAB43-208ENST00000615093 783 ntTSL 5 BASIC21.61■■□□□ 1.05
TPM1P09493 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
TPM1P09493 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
TPM1P09493 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
TPM1P09493 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
TPM1P09493 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
TPM1P09493 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC21.61■■□□□ 1.05
TPM1P09493 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
TPM1P09493 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
TPM1P09493 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
TPM1P09493 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
TPM1P09493 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC21.6■■□□□ 1.05
TPM1P09493 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms