Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HOXC4P09017 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
HOXC4P09017 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
HOXC4P09017 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC19.24■□□□□ 0.67
HOXC4P09017 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HOXC4P09017 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HOXC4P09017 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
HOXC4P09017 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
HOXC4P09017 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HOXC4P09017 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HOXC4P09017 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HOXC4P09017 AC079598.2-202ENST00000546624 1451 ntBASIC19.24■□□□□ 0.67
HOXC4P09017 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HOXC4P09017 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HOXC4P09017 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HOXC4P09017 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
HOXC4P09017 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC19.24■□□□□ 0.67
HOXC4P09017 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC19.24■□□□□ 0.67
HOXC4P09017 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HOXC4P09017 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HOXC4P09017 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC19.24■□□□□ 0.67
HOXC4P09017 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC19.24■□□□□ 0.67
HOXC4P09017 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC19.24■□□□□ 0.67
HOXC4P09017 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HOXC4P09017 DGCR10-201ENST00000609839 495 ntBASIC19.24■□□□□ 0.67
HOXC4P09017 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
HOXC4P09017 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC19.24■□□□□ 0.67
HOXC4P09017 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HOXC4P09017 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HOXC4P09017 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC19.23■□□□□ 0.67
HOXC4P09017 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HOXC4P09017 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HOXC4P09017 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC19.23■□□□□ 0.67
HOXC4P09017 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
HOXC4P09017 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HOXC4P09017 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HOXC4P09017 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HOXC4P09017 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
HOXC4P09017 PTPA-216ENST00000432651 857 ntTSL 2 BASIC19.23■□□□□ 0.67
HOXC4P09017 B3GAT3P1-201ENST00000471720 806 ntBASIC19.23■□□□□ 0.67
HOXC4P09017 FITM1-202ENST00000559294 800 ntBASIC19.23■□□□□ 0.67
HOXC4P09017 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC19.23■□□□□ 0.67
HOXC4P09017 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC19.23■□□□□ 0.67
HOXC4P09017 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC19.23■□□□□ 0.67
HOXC4P09017 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC19.23■□□□□ 0.67
HOXC4P09017 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC19.23■□□□□ 0.67
HOXC4P09017 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HOXC4P09017 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC19.23■□□□□ 0.67
HOXC4P09017 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HOXC4P09017 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HOXC4P09017 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
HOXC4P09017 AC099778.1-201ENST00000568593 1911 ntBASIC19.22■□□□□ 0.67
HOXC4P09017 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC19.22■□□□□ 0.67
HOXC4P09017 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HOXC4P09017 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HOXC4P09017 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC19.22■□□□□ 0.67
HOXC4P09017 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC19.22■□□□□ 0.67
HOXC4P09017 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
HOXC4P09017 ECEL1P3-201ENST00000427961 737 ntBASIC19.22■□□□□ 0.67
HOXC4P09017 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HOXC4P09017 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC19.22■□□□□ 0.67
HOXC4P09017 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC19.22■□□□□ 0.67
HOXC4P09017 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC19.22■□□□□ 0.67
HOXC4P09017 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC19.22■□□□□ 0.67
HOXC4P09017 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC19.22■□□□□ 0.67
HOXC4P09017 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC19.22■□□□□ 0.67
HOXC4P09017 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC19.22■□□□□ 0.67
HOXC4P09017 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC19.22■□□□□ 0.67
HOXC4P09017 AC130371.2-201ENST00000619443 611 ntBASIC19.22■□□□□ 0.67
HOXC4P09017 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC19.22■□□□□ 0.67
HOXC4P09017 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HOXC4P09017 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
HOXC4P09017 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
HOXC4P09017 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
HOXC4P09017 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
HOXC4P09017 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HOXC4P09017 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HOXC4P09017 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
HOXC4P09017 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
HOXC4P09017 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
HOXC4P09017 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
HOXC4P09017 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HOXC4P09017 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
HOXC4P09017 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC19.21■□□□□ 0.67
HOXC4P09017 AC011506.1-201ENST00000474329 610 ntBASIC19.21■□□□□ 0.67
HOXC4P09017 GLRB-205ENST00000512619 728 ntTSL 3 BASIC19.21■□□□□ 0.67
HOXC4P09017 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HOXC4P09017 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HOXC4P09017 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
HOXC4P09017 GRAMD4P8-201ENST00000605465 1115 ntBASIC19.21■□□□□ 0.67
HOXC4P09017 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC19.21■□□□□ 0.67
HOXC4P09017 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC19.21■□□□□ 0.67
HOXC4P09017 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC19.21■□□□□ 0.67
HOXC4P09017 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
HOXC4P09017 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
HOXC4P09017 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
HOXC4P09017 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HOXC4P09017 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
HOXC4P09017 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HOXC4P09017 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms