Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC19.74■□□□□ 0.75
VIMP08670 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
VIMP08670 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VIMP08670 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VIMP08670 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VIMP08670 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VIMP08670 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VIMP08670 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
VIMP08670 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VIMP08670 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
VIMP08670 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VIMP08670 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC19.73■□□□□ 0.75
VIMP08670 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC19.73■□□□□ 0.75
VIMP08670 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC19.73■□□□□ 0.75
VIMP08670 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC19.73■□□□□ 0.75
VIMP08670 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VIMP08670 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC19.73■□□□□ 0.75
VIMP08670 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VIMP08670 MFF-208ENST00000409616 1247 ntTSL 5 BASIC19.73■□□□□ 0.75
VIMP08670 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC19.73■□□□□ 0.75
VIMP08670 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
VIMP08670 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
VIMP08670 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC19.73■□□□□ 0.75
VIMP08670 COMP-202ENST00000425807 2292 ntTSL 2 BASIC19.73■□□□□ 0.75
VIMP08670 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VIMP08670 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
VIMP08670 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VIMP08670 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
VIMP08670 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC19.73■□□□□ 0.75
VIMP08670 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
VIMP08670 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VIMP08670 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC19.72■□□□□ 0.75
VIMP08670 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC19.72■□□□□ 0.75
VIMP08670 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
VIMP08670 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
VIMP08670 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VIMP08670 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VIMP08670 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VIMP08670 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VIMP08670 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
VIMP08670 KRT16P2-201ENST00000414673 1423 ntBASIC19.72■□□□□ 0.75
VIMP08670 AL356441.2-201ENST00000443009 864 ntBASIC19.72■□□□□ 0.75
VIMP08670 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC19.72■□□□□ 0.75
VIMP08670 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
VIMP08670 AC233992.3-201ENST00000607491 485 ntBASIC19.72■□□□□ 0.75
VIMP08670 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC19.72■□□□□ 0.75
VIMP08670 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VIMP08670 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VIMP08670 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC19.72■□□□□ 0.75
VIMP08670 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VIMP08670 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
VIMP08670 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VIMP08670 AL133373.2-201ENST00000623187 2828 ntBASIC19.71■□□□□ 0.75
VIMP08670 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VIMP08670 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VIMP08670 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VIMP08670 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC19.71■□□□□ 0.75
VIMP08670 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC19.71■□□□□ 0.75
VIMP08670 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC19.71■□□□□ 0.75
VIMP08670 RPP21-222ENST00000433076 577 ntTSL 2 BASIC19.71■□□□□ 0.75
VIMP08670 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VIMP08670 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC19.71■□□□□ 0.75
VIMP08670 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
VIMP08670 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VIMP08670 PCDHB18P-201ENST00000524813 2368 ntBASIC19.71■□□□□ 0.75
VIMP08670 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
VIMP08670 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC19.71■□□□□ 0.75
VIMP08670 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VIMP08670 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VIMP08670 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC19.7■□□□□ 0.74
VIMP08670 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
VIMP08670 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VIMP08670 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
VIMP08670 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC19.7■□□□□ 0.74
VIMP08670 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
VIMP08670 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC19.7■□□□□ 0.74
VIMP08670 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VIMP08670 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VIMP08670 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VIMP08670 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VIMP08670 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC19.7■□□□□ 0.74
VIMP08670 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC19.7■□□□□ 0.74
VIMP08670 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC19.7■□□□□ 0.74
VIMP08670 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VIMP08670 AICDA-202ENST00000537228 667 ntTSL 5 BASIC19.7■□□□□ 0.74
VIMP08670 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
VIMP08670 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
VIMP08670 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
VIMP08670 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VIMP08670 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC19.7■□□□□ 0.74
VIMP08670 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VIMP08670 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
VIMP08670 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VIMP08670 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
VIMP08670 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC19.7■□□□□ 0.74
VIMP08670 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
VIMP08670 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VIMP08670 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC19.7■□□□□ 0.74
VIMP08670 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC19.7■□□□□ 0.74
VIMP08670 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC19.7■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms