Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
RNF40O75150 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC21.15■□□□□ 0.98
RNF40O75150 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC21.15■□□□□ 0.98
RNF40O75150 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC21.15■□□□□ 0.98
RNF40O75150 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
RNF40O75150 AC008403.3-201ENST00000598924 454 ntBASIC21.15■□□□□ 0.98
RNF40O75150 AL589743.5-201ENST00000616611 1050 ntBASIC21.15■□□□□ 0.98
RNF40O75150 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RNF40O75150 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
RNF40O75150 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
RNF40O75150 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RNF40O75150 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RNF40O75150 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
RNF40O75150 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
RNF40O75150 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC21.14■□□□□ 0.98
RNF40O75150 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC21.14■□□□□ 0.97
RNF40O75150 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
RNF40O75150 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
RNF40O75150 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC21.14■□□□□ 0.97
RNF40O75150 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
RNF40O75150 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
RNF40O75150 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
RNF40O75150 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
RNF40O75150 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
RNF40O75150 USP36-216ENST00000589424 970 ntTSL 5 BASIC21.14■□□□□ 0.97
RNF40O75150 HLA-B-256ENST00000639848 1089 ntBASIC21.14■□□□□ 0.97
RNF40O75150 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
RNF40O75150 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
RNF40O75150 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
RNF40O75150 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
RNF40O75150 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC21.13■□□□□ 0.97
RNF40O75150 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RNF40O75150 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RNF40O75150 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
RNF40O75150 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC21.13■□□□□ 0.97
RNF40O75150 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC21.13■□□□□ 0.97
RNF40O75150 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
RNF40O75150 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC21.13■□□□□ 0.97
RNF40O75150 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
RNF40O75150 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RNF40O75150 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
RNF40O75150 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC21.13■□□□□ 0.97
RNF40O75150 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RNF40O75150 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC21.13■□□□□ 0.97
RNF40O75150 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
RNF40O75150 MCRIP2P1-201ENST00000394346 511 ntBASIC21.13■□□□□ 0.97
RNF40O75150 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC21.13■□□□□ 0.97
RNF40O75150 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
RNF40O75150 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
RNF40O75150 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC21.13■□□□□ 0.97
RNF40O75150 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC21.13■□□□□ 0.97
RNF40O75150 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC21.13■□□□□ 0.97
RNF40O75150 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
RNF40O75150 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC21.13■□□□□ 0.97
RNF40O75150 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
RNF40O75150 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
RNF40O75150 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RNF40O75150 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RNF40O75150 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RNF40O75150 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RNF40O75150 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
RNF40O75150 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC21.12■□□□□ 0.97
RNF40O75150 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RNF40O75150 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RNF40O75150 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
RNF40O75150 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RNF40O75150 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RNF40O75150 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RNF40O75150 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
RNF40O75150 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RNF40O75150 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
RNF40O75150 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC21.12■□□□□ 0.97
RNF40O75150 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC21.12■□□□□ 0.97
RNF40O75150 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC21.12■□□□□ 0.97
RNF40O75150 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
RNF40O75150 AC008550.1-201ENST00000511500 884 ntBASIC21.12■□□□□ 0.97
RNF40O75150 RHOD-202ENST00000532559 538 ntTSL 3 BASIC21.12■□□□□ 0.97
RNF40O75150 AL359736.2-201ENST00000621992 437 ntBASIC21.12■□□□□ 0.97
RNF40O75150 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
RNF40O75150 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RNF40O75150 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RNF40O75150 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
RNF40O75150 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC21.12■□□□□ 0.97
RNF40O75150 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC21.12■□□□□ 0.97
RNF40O75150 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
RNF40O75150 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RNF40O75150 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RNF40O75150 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
RNF40O75150 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
RNF40O75150 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RNF40O75150 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC21.12■□□□□ 0.97
RNF40O75150 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC21.11■□□□□ 0.97
RNF40O75150 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC21.11■□□□□ 0.97
RNF40O75150 NARF-205ENST00000412079 1760 ntTSL 5 BASIC21.11■□□□□ 0.97
RNF40O75150 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RNF40O75150 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
RNF40O75150 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RNF40O75150 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RNF40O75150 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
RNF40O75150 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC21.11■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms