Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM13O60858 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM13O60858 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
TRIM13O60858 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC19.35■□□□□ 0.69
TRIM13O60858 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM13O60858 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM13O60858 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM13O60858 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM13O60858 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC19.35■□□□□ 0.69
TRIM13O60858 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM13O60858 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC19.35■□□□□ 0.69
TRIM13O60858 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRIM13O60858 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC19.34■□□□□ 0.69
TRIM13O60858 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
TRIM13O60858 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
TRIM13O60858 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRIM13O60858 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC19.34■□□□□ 0.69
TRIM13O60858 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC19.34■□□□□ 0.69
TRIM13O60858 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC19.34■□□□□ 0.69
TRIM13O60858 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
TRIM13O60858 AC034268.1-201ENST00000441047 882 ntBASIC19.34■□□□□ 0.69
TRIM13O60858 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC19.34■□□□□ 0.69
TRIM13O60858 BRWD1-AS2-201ENST00000603064 1028 ntBASIC19.34■□□□□ 0.69
TRIM13O60858 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
TRIM13O60858 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRIM13O60858 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
TRIM13O60858 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRIM13O60858 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRIM13O60858 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRIM13O60858 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
TRIM13O60858 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
TRIM13O60858 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
TRIM13O60858 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
TRIM13O60858 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.69
TRIM13O60858 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC19.33■□□□□ 0.69
TRIM13O60858 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
TRIM13O60858 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
TRIM13O60858 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
TRIM13O60858 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
TRIM13O60858 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC19.33■□□□□ 0.69
TRIM13O60858 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC19.33■□□□□ 0.68
TRIM13O60858 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC19.33■□□□□ 0.68
TRIM13O60858 AC023632.3-201ENST00000521633 145 ntBASIC19.33■□□□□ 0.68
TRIM13O60858 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
TRIM13O60858 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC19.33■□□□□ 0.68
TRIM13O60858 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC19.33■□□□□ 0.68
TRIM13O60858 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC19.33■□□□□ 0.68
TRIM13O60858 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC19.33■□□□□ 0.68
TRIM13O60858 CYP2T3P-201ENST00000601990 817 ntBASIC19.33■□□□□ 0.68
TRIM13O60858 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
TRIM13O60858 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TRIM13O60858 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC19.33■□□□□ 0.68
TRIM13O60858 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TRIM13O60858 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
TRIM13O60858 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.68
TRIM13O60858 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TRIM13O60858 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM13O60858 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM13O60858 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM13O60858 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM13O60858 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM13O60858 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC19.32■□□□□ 0.68
TRIM13O60858 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
TRIM13O60858 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM13O60858 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC19.32■□□□□ 0.68
TRIM13O60858 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM13O60858 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM13O60858 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM13O60858 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC19.32■□□□□ 0.68
TRIM13O60858 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
TRIM13O60858 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM13O60858 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
TRIM13O60858 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC19.32■□□□□ 0.68
TRIM13O60858 CNN2P6-201ENST00000439038 900 ntBASIC19.32■□□□□ 0.68
TRIM13O60858 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM13O60858 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC19.32■□□□□ 0.68
TRIM13O60858 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC19.32■□□□□ 0.68
TRIM13O60858 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM13O60858 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC19.32■□□□□ 0.68
TRIM13O60858 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC19.32■□□□□ 0.68
TRIM13O60858 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC19.32■□□□□ 0.68
TRIM13O60858 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM13O60858 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC19.32■□□□□ 0.68
TRIM13O60858 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
TRIM13O60858 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM13O60858 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC19.32■□□□□ 0.68
TRIM13O60858 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM13O60858 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
TRIM13O60858 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC19.32■□□□□ 0.68
TRIM13O60858 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC19.32■□□□□ 0.68
TRIM13O60858 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM13O60858 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM13O60858 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM13O60858 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM13O60858 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
TRIM13O60858 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM13O60858 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
TRIM13O60858 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM13O60858 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC19.31■□□□□ 0.68
TRIM13O60858 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms