Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC15.36■□□□□ 0.05
COL6A5A8TX70 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
COL6A5A8TX70 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC15.36■□□□□ 0.05
COL6A5A8TX70 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC15.36■□□□□ 0.05
COL6A5A8TX70 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
COL6A5A8TX70 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
COL6A5A8TX70 BX276092.5-203ENST00000456199 560 ntBASIC15.36■□□□□ 0.05
COL6A5A8TX70 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC15.36■□□□□ 0.05
COL6A5A8TX70 AC092597.1-201ENST00000487352 616 ntBASIC15.36■□□□□ 0.05
COL6A5A8TX70 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC15.36■□□□□ 0.05
COL6A5A8TX70 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC15.36■□□□□ 0.05
COL6A5A8TX70 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
COL6A5A8TX70 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC15.36■□□□□ 0.05
COL6A5A8TX70 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC15.36■□□□□ 0.05
COL6A5A8TX70 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC15.36■□□□□ 0.05
COL6A5A8TX70 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC15.36■□□□□ 0.05
COL6A5A8TX70 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC15.36■□□□□ 0.05
COL6A5A8TX70 AP001160.2-201ENST00000596071 487 ntBASIC15.36■□□□□ 0.05
COL6A5A8TX70 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
COL6A5A8TX70 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
COL6A5A8TX70 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
COL6A5A8TX70 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
COL6A5A8TX70 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC15.36■□□□□ 0.05
COL6A5A8TX70 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL6A5A8TX70 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL6A5A8TX70 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
COL6A5A8TX70 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
COL6A5A8TX70 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
COL6A5A8TX70 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
COL6A5A8TX70 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL6A5A8TX70 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
COL6A5A8TX70 TK1-205ENST00000590862 642 ntTSL 3 BASIC15.35■□□□□ 0.05
COL6A5A8TX70 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC15.35■□□□□ 0.05
COL6A5A8TX70 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL6A5A8TX70 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL6A5A8TX70 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC15.35■□□□□ 0.05
COL6A5A8TX70 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
COL6A5A8TX70 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL6A5A8TX70 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL6A5A8TX70 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC15.35■□□□□ 0.05
COL6A5A8TX70 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL6A5A8TX70 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
COL6A5A8TX70 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC15.35■□□□□ 0.05
COL6A5A8TX70 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL6A5A8TX70 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC15.35■□□□□ 0.05
COL6A5A8TX70 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC15.35■□□□□ 0.05
COL6A5A8TX70 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC15.35■□□□□ 0.05
COL6A5A8TX70 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC15.35■□□□□ 0.05
COL6A5A8TX70 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC15.35■□□□□ 0.05
COL6A5A8TX70 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL6A5A8TX70 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC15.34■□□□□ 0.05
COL6A5A8TX70 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
COL6A5A8TX70 HNRNPA1P28-201ENST00000424481 961 ntBASIC15.34■□□□□ 0.05
COL6A5A8TX70 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC15.34■□□□□ 0.05
COL6A5A8TX70 TPSP2-201ENST00000561760 610 ntBASIC15.34■□□□□ 0.05
COL6A5A8TX70 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC15.34■□□□□ 0.05
COL6A5A8TX70 PALM-207ENST00000590161 2137 ntTSL 4 BASIC15.34■□□□□ 0.05
COL6A5A8TX70 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
COL6A5A8TX70 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
COL6A5A8TX70 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC15.34■□□□□ 0.05
COL6A5A8TX70 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
COL6A5A8TX70 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
COL6A5A8TX70 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC15.34■□□□□ 0.05
COL6A5A8TX70 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
COL6A5A8TX70 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
COL6A5A8TX70 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
COL6A5A8TX70 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
COL6A5A8TX70 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
COL6A5A8TX70 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
COL6A5A8TX70 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
COL6A5A8TX70 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC15.34■□□□□ 0.05
COL6A5A8TX70 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC15.34■□□□□ 0.05
COL6A5A8TX70 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC15.34■□□□□ 0.05
COL6A5A8TX70 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.05
COL6A5A8TX70 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC15.33■□□□□ 0.05
COL6A5A8TX70 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC15.33■□□□□ 0.05
COL6A5A8TX70 ABR-217ENST00000572441 563 ntTSL 4 BASIC15.33■□□□□ 0.05
COL6A5A8TX70 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC15.33■□□□□ 0.05
COL6A5A8TX70 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC15.33■□□□□ 0.05
COL6A5A8TX70 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
COL6A5A8TX70 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
COL6A5A8TX70 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC15.33■□□□□ 0.04
COL6A5A8TX70 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
COL6A5A8TX70 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
COL6A5A8TX70 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
COL6A5A8TX70 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC15.33■□□□□ 0.04
COL6A5A8TX70 IL11-204ENST00000590625 1028 ntTSL 2 BASIC15.33■□□□□ 0.04
COL6A5A8TX70 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
COL6A5A8TX70 TERC-201ENST00000602385 541 ntBASIC15.33■□□□□ 0.04
COL6A5A8TX70 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
COL6A5A8TX70 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC15.33■□□□□ 0.04
COL6A5A8TX70 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
COL6A5A8TX70 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL6A5A8TX70 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
COL6A5A8TX70 KRT8P36-201ENST00000489121 1440 ntBASIC15.32■□□□□ 0.04
COL6A5A8TX70 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC15.32■□□□□ 0.04
COL6A5A8TX70 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
COL6A5A8TX70 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
COL6A5A8TX70 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC15.32■□□□□ 0.04
COL6A5A8TX70 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 68.4 ms