Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 AC247036.1-201ENST00000605005 389 ntTSL 2 BASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 AL451049.1-201ENST00000608672 497 ntBASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 AC078899.5-201ENST00000612475 178 ntBASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 GNAS-AS1_2.1-201ENST00000613404 114 ntBASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 GNAS-AS1_5.1-201ENST00000614281 121 ntBASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 AC009318.4-201ENST00000620496 486 ntBASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 CU638689.4-203ENST00000625185 785 ntTSL 5 BASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 ANKMY2-205ENST00000627859 210 ntTSL 5 BASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 SRP54-214ENST00000630962 162 ntTSL 5 BASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 SLC15A1-202ENST00000376503 3106 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 RPS4X-201ENST00000316084 1526 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 AC139256.1-201ENST00000569858 2598 ntTSL 2 BASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 SOX5-203ENST00000396007 1379 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 CU633906.2-201ENST00000624576 2257 ntTSL 5 BASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 LINC00672-201ENST00000583195 3692 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 SCIN-201ENST00000297029 9713 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 CDR1-202ENST00000625883 1485 ntBASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 SORL1-212ENST00000534286 3501 ntTSL 2 BASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 CEP95-201ENST00000553412 2492 ntAPPRIS ALT2 TSL 5 BASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 CTNND1-234ENST00000532844 6012 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 ZNF19-201ENST00000288177 3220 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 DEPDC1B-202ENST00000453022 1569 ntTSL 2 BASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 NAT1-210ENST00000545197 1827 ntTSL 5 BASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 LINC01234-202ENST00000547963 2088 ntTSL 2 BASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 C1GALT1-201ENST00000223122 6078 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 AC009108.3-201ENST00000602739 3515 ntBASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 SLC26A9-202ENST00000367134 4616 ntTSL 5 BASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 MOBP-201ENST00000311042 3388 ntAPPRIS ALT2 TSL 2 BASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 IPP-202ENST00000396478 3113 ntAPPRIS P1 TSL 2 BASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 ZIM3-201ENST00000269834 2627 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 RUNX1T1-203ENST00000396218 3463 ntAPPRIS ALT1 TSL 1 (best) BASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 AL008638.2-201ENST00000453934 2383 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 SERPINB13-201ENST00000269489 3206 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 BPIFA1-202ENST00000375413 1026 ntAPPRIS P2 TSL 1 (best) BASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 MT-TS1-201ENST00000387416 69 ntBASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 TIMD4-203ENST00000407087 1145 ntAPPRIS ALT2 TSL 2 BASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 AL356968.1-201ENST00000416622 474 ntBASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 RPS26P13-201ENST00000419030 330 ntBASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 PUDPP1-201ENST00000421058 495 ntBASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 VDAC1P2-201ENST00000423609 850 ntBASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 AP000997.1-201ENST00000424313 479 ntTSL 3 BASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 AL589872.1-201ENST00000426602 288 ntBASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 RPS3AP52-201ENST00000435639 297 ntBASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 AC016683.1-201ENST00000446590 559 ntTSL 4 BASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 AL157827.1-201ENST00000447622 132 ntBASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 RPL7P52-201ENST00000449200 742 ntBASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 NPM1P39-201ENST00000449818 867 ntBASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 AL135908.1-202ENST00000454135 562 ntTSL 2 BASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 UBE2R2-AS1-201ENST00000454429 647 ntTSL 5 BASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 RN7SL580P-201ENST00000492489 287 ntBASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 AC122714.1-201ENST00000502510 459 ntBASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 AC068587.4-201ENST00000533893 186 ntBASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 MAL2-203ENST00000534619 578 ntTSL 4 BASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 OR52E8-201ENST00000537935 1061 ntAPPRIS P1 BASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 AC122685.1-202ENST00000556750 555 ntTSL 2 BASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 AC009117.1-201ENST00000563948 554 ntBASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 AC099518.1-201ENST00000568032 841 ntTSL 3 BASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 RN7SL619P-201ENST00000581753 258 ntBASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 AC020908.1-201ENST00000598893 280 ntTSL 3 BASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 AL359999.1-201ENST00000604513 294 ntBASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 AC098479.1-201ENST00000609225 154 ntBASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 Metazoa_SRP.115-201ENST00000619303 284 ntBASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 AC026336.5-201ENST00000624455 738 ntBASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 IMPG1-204ENST00000611179 3324 ntAPPRIS ALT2 TSL 5 BASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 PDE4DIP-246ENST00000618462 8150 ntAPPRIS ALT2 TSL 1 (best) BASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 LINC01822-201ENST00000435682 2098 ntTSL 2 BASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 SLC2A3P2-201ENST00000331747 1480 ntBASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 ATP13A4-204ENST00000400270 1458 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 ZNF343-208ENST00000617391 3300 ntTSL 4 BASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 SPRYD4-201ENST00000338146 10779 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 NAT10-205ENST00000531159 3436 ntAPPRIS ALT2 TSL 2 BASIC8.31□□□□□ -1.08
VPS9D1Q9Y2B5 SCNN1G-201ENST00000300061 3507 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 AC117409.1-201ENST00000470499 1310 ntBASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 SIPA1L1-202ENST00000381232 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 IKZF3-205ENST00000350532 1413 ntTSL 5 BASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 IKZF3-206ENST00000351680 1413 ntTSL 5 BASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 IQCJ-SCHIP1-205ENST00000527095 1410 ntAPPRIS ALT2 TSL 5 BASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 PIWIL3-202ENST00000527701 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 AC013268.3-201ENST00000262716 2324 ntBASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 ZNF234-201ENST00000426739 4551 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 TP63-211ENST00000449992 1506 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 SELP-202ENST00000367786 2402 ntAPPRIS ALT2 TSL 5 BASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 CTNNA2-218ENST00000541047 2870 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 DCAF4-212ENST00000553457 2896 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 SRCAP-201ENST00000262518 11754 ntAPPRIS P1 TSL 2 BASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 LINC02059-202ENST00000506471 2094 ntTSL 2 BASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 CYB5D1-201ENST00000332439 3509 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 OPTN-203ENST00000378748 3521 ntAPPRIS P2 TSL 1 (best) BASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 IST1-208ENST00000535424 4082 ntTSL 5 BASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 RPL7P26-201ENST00000333817 754 ntBASIC8.3□□□□□ -1.08
Retrieved 100 of 98,524 protein–RNA pairs in 74.2 ms