Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 RIOK2-202ENST00000508447 2149 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
HSPG2P98160 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC3.36□□□□□ -1.87
HSPG2P98160 AL590065.1-201ENST00000603371 4774 ntBASIC3.36□□□□□ -1.87
HSPG2P98160 POT1-201ENST00000357628 4080 ntAPPRIS P1 TSL 2 BASIC3.36□□□□□ -1.87
HSPG2P98160 TMED2-203ENST00000509052 1975 ntTSL 2 BASIC3.36□□□□□ -1.87
HSPG2P98160 RASSF2-202ENST00000379400 5427 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
HSPG2P98160 AP000997.2-201ENST00000564619 8400 ntBASIC3.36□□□□□ -1.87
HSPG2P98160 KANSL3-206ENST00000431828 5153 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
HSPG2P98160 SLC3A1-203ENST00000409294 792 ntTSL 2 BASIC3.36□□□□□ -1.87
HSPG2P98160 SNORA84-201ENST00000459229 133 ntBASIC3.36□□□□□ -1.87
HSPG2P98160 AC021074.2-201ENST00000468434 172 ntBASIC3.36□□□□□ -1.87
HSPG2P98160 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC3.36□□□□□ -1.87
HSPG2P98160 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC3.36□□□□□ -1.87
HSPG2P98160 AC007346.2-201ENST00000564816 892 ntBASIC3.36□□□□□ -1.87
HSPG2P98160 AC021483.2-201ENST00000567415 758 ntBASIC3.36□□□□□ -1.87
HSPG2P98160 MSR1-202ENST00000350896 3572 ntTSL 5 BASIC3.36□□□□□ -1.87
HSPG2P98160 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC3.36□□□□□ -1.87
HSPG2P98160 LRRC28-201ENST00000301981 5971 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
HSPG2P98160 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
HSPG2P98160 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
HSPG2P98160 CACNA1E-205ENST00000367570 9724 ntAPPRIS P3 TSL 1 (best) BASIC3.36□□□□□ -1.87
HSPG2P98160 AL132640.2-201ENST00000559968 1698 ntBASIC3.36□□□□□ -1.87
HSPG2P98160 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
HSPG2P98160 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC3.36□□□□□ -1.87
HSPG2P98160 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC3.36□□□□□ -1.87
HSPG2P98160 CTNND1-230ENST00000532245 5655 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
HSPG2P98160 ITGB6-211ENST00000620391 4401 ntTSL 3 BASIC3.36□□□□□ -1.87
HSPG2P98160 AR-201ENST00000374690 10652 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
HSPG2P98160 COL6A5-201ENST00000265379 9214 ntAPPRIS P1 TSL 5 BASIC3.36□□□□□ -1.87
HSPG2P98160 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC3.35□□□□□ -1.87
HSPG2P98160 RPE65-201ENST00000262340 2610 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
HSPG2P98160 TP53BP1-210ENST00000450115 6179 ntAPPRIS ALT2 TSL 1 (best) BASIC3.35□□□□□ -1.87
HSPG2P98160 RNA5SP487-201ENST00000410186 122 ntBASIC3.35□□□□□ -1.87
HSPG2P98160 RNU2-50P-201ENST00000410494 143 ntBASIC3.35□□□□□ -1.87
HSPG2P98160 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC3.35□□□□□ -1.87
HSPG2P98160 LINC01820-201ENST00000418415 570 ntTSL 2 BASIC3.35□□□□□ -1.87
HSPG2P98160 RPEP3-201ENST00000425462 676 ntBASIC3.35□□□□□ -1.87
HSPG2P98160 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC3.35□□□□□ -1.87
HSPG2P98160 AURKAPS2-201ENST00000454983 333 ntBASIC3.35□□□□□ -1.87
HSPG2P98160 RPL7L1P3-201ENST00000455249 689 ntBASIC3.35□□□□□ -1.87
HSPG2P98160 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC3.35□□□□□ -1.87
HSPG2P98160 AC011005.3-201ENST00000491624 395 ntBASIC3.35□□□□□ -1.87
HSPG2P98160 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
HSPG2P98160 AC139697.1-201ENST00000548429 745 ntBASIC3.35□□□□□ -1.87
HSPG2P98160 MIR4444-1-201ENST00000581696 74 ntBASIC3.35□□□□□ -1.87
HSPG2P98160 MIR4444-2-201ENST00000584390 74 ntBASIC3.35□□□□□ -1.87
HSPG2P98160 MTCO1P1-201ENST00000624263 1081 ntBASIC3.35□□□□□ -1.87
HSPG2P98160 NUMB-204ENST00000535282 3198 ntAPPRIS ALT1 TSL 5 BASIC3.35□□□□□ -1.87
HSPG2P98160 PTPN4-201ENST00000263708 10300 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
HSPG2P98160 KIAA0391-209ENST00000604948 1706 ntAPPRIS ALT2 TSL 2 BASIC3.35□□□□□ -1.87
HSPG2P98160 PTPRB-209ENST00000550857 5839 ntAPPRIS ALT2 TSL 1 (best) BASIC3.35□□□□□ -1.87
HSPG2P98160 SNHG14-226ENST00000640631 13074 ntTSL 5 BASIC3.35□□□□□ -1.87
HSPG2P98160 EDA-213ENST00000616899 4643 ntTSL 5 BASIC3.35□□□□□ -1.87
HSPG2P98160 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
HSPG2P98160 DENND2C-201ENST00000393274 6163 ntTSL 5 BASIC3.35□□□□□ -1.87
HSPG2P98160 UPRT-207ENST00000530743 1636 ntTSL 2 BASIC3.35□□□□□ -1.87
HSPG2P98160 SZT2-209ENST00000562955 13968 ntAPPRIS P2 TSL 5 BASIC3.35□□□□□ -1.87
HSPG2P98160 CCT8P1-201ENST00000413611 1657 ntBASIC3.35□□□□□ -1.87
HSPG2P98160 NAT1-206ENST00000518029 2162 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
HSPG2P98160 CPM-211ENST00000551568 6655 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
HSPG2P98160 GPS2P1-201ENST00000411761 986 ntBASIC3.35□□□□□ -1.87
HSPG2P98160 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC3.35□□□□□ -1.87
HSPG2P98160 AL592293.2-201ENST00000422292 996 ntBASIC3.35□□□□□ -1.87
HSPG2P98160 CENPIP1-201ENST00000425713 902 ntBASIC3.35□□□□□ -1.87
HSPG2P98160 AC073062.1-201ENST00000434509 455 ntTSL 5 BASIC3.35□□□□□ -1.87
HSPG2P98160 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC3.35□□□□□ -1.87
HSPG2P98160 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC3.35□□□□□ -1.87
HSPG2P98160 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC3.35□□□□□ -1.87
HSPG2P98160 HMGB1P40-201ENST00000525121 540 ntBASIC3.35□□□□□ -1.87
HSPG2P98160 OR4A17P-201ENST00000526032 904 ntBASIC3.35□□□□□ -1.87
HSPG2P98160 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC3.35□□□□□ -1.87
HSPG2P98160 BNIP3P5-201ENST00000562290 498 ntBASIC3.35□□□□□ -1.87
HSPG2P98160 MYLK-221ENST00000583087 678 ntTSL 4 BASIC3.35□□□□□ -1.87
HSPG2P98160 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC3.35□□□□□ -1.87
HSPG2P98160 MEMO1P5-201ENST00000604810 406 ntBASIC3.35□□□□□ -1.87
HSPG2P98160 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC3.35□□□□□ -1.87
HSPG2P98160 SPOCK1-201ENST00000282223 4488 ntTSL 5 BASIC3.35□□□□□ -1.87
HSPG2P98160 AC098850.4-201ENST00000448331 8802 ntAPPRIS P1 TSL 2 BASIC3.35□□□□□ -1.87
HSPG2P98160 TRIM22-201ENST00000379965 2989 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
HSPG2P98160 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
HSPG2P98160 NXF4-202ENST00000416098 1465 ntBASIC3.35□□□□□ -1.87
HSPG2P98160 RIPK1-202ENST00000380409 3864 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
HSPG2P98160 AC018765.1-201ENST00000623357 3446 ntBASIC3.35□□□□□ -1.87
HSPG2P98160 AP002991.2-201ENST00000623807 2801 ntBASIC3.35□□□□□ -1.87
HSPG2P98160 MEPE-209ENST00000560249 2206 ntAPPRIS ALT2 TSL 1 (best) BASIC3.35□□□□□ -1.87
HSPG2P98160 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC3.35□□□□□ -1.87
HSPG2P98160 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC3.35□□□□□ -1.87
HSPG2P98160 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
HSPG2P98160 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC3.35□□□□□ -1.87
HSPG2P98160 ZNF271P-201ENST00000399070 5124 ntTSL 2 BASIC3.35□□□□□ -1.87
HSPG2P98160 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
HSPG2P98160 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC3.35□□□□□ -1.87
HSPG2P98160 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
HSPG2P98160 DEFB1-201ENST00000297439 478 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
HSPG2P98160 C1orf162-201ENST00000343534 1107 ntAPPRIS P3 TSL 1 (best) BASIC3.35□□□□□ -1.87
HSPG2P98160 RNU6ATAC34P-201ENST00000408879 121 ntBASIC3.35□□□□□ -1.87
HSPG2P98160 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC3.35□□□□□ -1.87
HSPG2P98160 AP001542.3-201ENST00000587619 527 ntTSL 5 BASIC3.35□□□□□ -1.87
HSPG2P98160 AC020765.1-201ENST00000604296 328 ntBASIC3.35□□□□□ -1.87
HSPG2P98160 AC008785.1-201ENST00000624475 456 ntBASIC3.35□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 82.1 ms