Protein–RNA interactions for Protein: Q8TCU4

ALMS1, Alstrom syndrome protein 1, humanhuman

Predictions only

Length 4,167 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALMS1Q8TCU4 LINC00871-204ENST00000556886 866 ntTSL 3 BASIC3.81□□□□□ -1.8
ALMS1Q8TCU4 AC008745.1-201ENST00000604064 271 ntBASIC3.81□□□□□ -1.8
ALMS1Q8TCU4 CDC37L1-AS1-202ENST00000609131 235 ntTSL 2 BASIC3.81□□□□□ -1.8
ALMS1Q8TCU4 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC3.81□□□□□ -1.8
ALMS1Q8TCU4 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 EPB41L2-220ENST00000528282 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 FREM2-201ENST00000280481 16070 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 SMIM21-203ENST00000584508 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 STMN2-201ENST00000220876 2223 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 UTP4-204ENST00000563094 4183 ntTSL 2 BASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 NKRF-204ENST00000542113 3351 ntTSL 3 BASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 RYBP-201ENST00000477973 7215 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 SYNPO2-206ENST00000610556 3934 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 AC087258.1-203ENST00000545400 1629 ntTSL 2 BASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 FMN1-211ENST00000561249 4251 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 ZNF845-202ENST00000595091 4413 ntAPPRIS P1 TSL 4 BASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 ATXN3-206ENST00000502250 1259 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 DPPA3P2-202ENST00000557188 1219 ntBASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 Z98949.1-210ENST00000597548 766 ntTSL 5 BASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 AC021422.1-201ENST00000621212 473 ntBASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 SOX5-205ENST00000451604 4261 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 GRIK2-207ENST00000421544 4789 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 RPGRIP1L-202ENST00000379925 5297 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 BTBD10-210ENST00000530907 1871 ntAPPRIS ALT1 TSL 2 BASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 AC011493.1-201ENST00000596753 1632 ntBASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 PSG5-210ENST00000599812 1884 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 LINGO2-202ENST00000379992 3044 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 AL590004.4-201ENST00000566733 7060 ntBASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 HPS5-205ENST00000438420 4147 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 TEX38-202ENST00000415500 566 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 LINC01781-202ENST00000443104 591 ntTSL 2 BASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 NDUFAF4P2-201ENST00000445374 520 ntBASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 RPL7AP28-201ENST00000464513 571 ntBASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 NXF3-201ENST00000395065 1938 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 THAP12P9-201ENST00000503971 2360 ntBASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 ZNF207-207ENST00000577908 4672 ntAPPRIS ALT1 TSL 5 BASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 ATP5G3-201ENST00000284727 5484 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 TAF1-201ENST00000276072 5692 ntAPPRIS P3 TSL 5 BASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 LINC02249-202ENST00000562624 4260 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 ASAH1-232ENST00000636691 2472 ntTSL 5 BASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 RNU1-32P-201ENST00000363937 159 ntBASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 SNORA51.8-201ENST00000384234 132 ntBASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 LINC00463-201ENST00000413501 1147 ntTSL 3 BASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 AC011753.3-201ENST00000443436 406 ntBASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 PDCL3P4-201ENST00000489621 720 ntBASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 MAL2-207ENST00000522828 603 ntTSL 3 BASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 IGHVIII-76-1-201ENST00000523776 286 ntBASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 AC211433.1-206ENST00000595409 733 ntTSL 5 BASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 SAMD9L-209ENST00000610760 1221 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 AL161616.1-201ENST00000611867 286 ntBASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 RCAN2-201ENST00000306764 3240 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 IMMTP1-201ENST00000435590 2219 ntBASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 MAGI2-235ENST00000637282 3174 ntTSL 5 BASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 LRRC37A2-201ENST00000333412 5177 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
ALMS1Q8TCU4 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC3.79□□□□□ -1.8
ALMS1Q8TCU4 COL25A1-208ENST00000610288 4799 ntTSL 5 BASIC3.79□□□□□ -1.8
ALMS1Q8TCU4 SPEF2-211ENST00000509059 4707 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
ALMS1Q8TCU4 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
ALMS1Q8TCU4 RNU1-43P-201ENST00000365052 165 ntBASIC3.79□□□□□ -1.8
ALMS1Q8TCU4 VDAC2P4-201ENST00000452925 711 ntBASIC3.79□□□□□ -1.8
ALMS1Q8TCU4 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC3.79□□□□□ -1.8
ALMS1Q8TCU4 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
ALMS1Q8TCU4 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC3.79□□□□□ -1.8
ALMS1Q8TCU4 MIR4311-201ENST00000580794 100 ntBASIC3.79□□□□□ -1.8
ALMS1Q8TCU4 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC3.79□□□□□ -1.8
ALMS1Q8TCU4 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
ALMS1Q8TCU4 TRAPPC2-203ENST00000380579 2776 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
ALMS1Q8TCU4 KLHL3-209ENST00000508657 6981 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
ALMS1Q8TCU4 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
ALMS1Q8TCU4 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
ALMS1Q8TCU4 USP9X-201ENST00000324545 12401 ntTSL 5 BASIC3.79□□□□□ -1.8
ALMS1Q8TCU4 MAP9-201ENST00000311277 7333 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
ALMS1Q8TCU4 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
ALMS1Q8TCU4 C1GALT1-201ENST00000223122 6078 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
ALMS1Q8TCU4 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC3.79□□□□□ -1.8
ALMS1Q8TCU4 ADGRL3-213ENST00000509896 5069 ntTSL 5 BASIC3.79□□□□□ -1.8
ALMS1Q8TCU4 CLASP1-208ENST00000455322 5660 ntTSL 5 BASIC3.79□□□□□ -1.8
ALMS1Q8TCU4 PLCH1-AS1-201ENST00000475196 1308 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
ALMS1Q8TCU4 YOD1-202ENST00000367084 6291 ntTSL 2 BASIC3.79□□□□□ -1.8
ALMS1Q8TCU4 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC3.79□□□□□ -1.8
ALMS1Q8TCU4 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC3.79□□□□□ -1.8
ALMS1Q8TCU4 MR1-209ENST00000617803 7584 ntTSL 5 BASIC3.79□□□□□ -1.8
ALMS1Q8TCU4 RPL32P3-201ENST00000359025 275 ntBASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms