Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 PIGN-221ENST00000638183 4046 ntTSL 5 BASIC6.9□□□□□ -1.3
COL8A1P27658 AC117382.2-201ENST00000564748 3151 ntBASIC6.9□□□□□ -1.31
COL8A1P27658 ZNF37BP-203ENST00000452306 1352 ntBASIC6.9□□□□□ -1.31
COL8A1P27658 AP004243.1-201ENST00000529108 1433 ntAPPRIS P1 TSL 5 BASIC6.9□□□□□ -1.31
COL8A1P27658 DARS2-201ENST00000361951 3506 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.31
COL8A1P27658 AC009108.3-201ENST00000602739 3515 ntBASIC6.9□□□□□ -1.31
COL8A1P27658 RNF139-AS1-201ENST00000499418 5654 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
COL8A1P27658 DLG2-211ENST00000426717 5927 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
COL8A1P27658 LAMP2-202ENST00000371335 4030 ntAPPRIS ALT2 TSL 1 (best) BASIC6.9□□□□□ -1.31
COL8A1P27658 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
COL8A1P27658 TTC7B-201ENST00000328459 19458 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.31
COL8A1P27658 ABLIM3-202ENST00000326685 4164 ntTSL 5 BASIC6.9□□□□□ -1.31
COL8A1P27658 MS4A6A-208ENST00000528851 1806 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
COL8A1P27658 CLK1-201ENST00000321356 1888 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.31
COL8A1P27658 RTN4-205ENST00000394609 1898 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.31
COL8A1P27658 ACTR6-202ENST00000546902 1877 ntTSL 2 BASIC6.9□□□□□ -1.31
COL8A1P27658 NHLRC3-201ENST00000379599 3275 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
COL8A1P27658 SLC7A14-201ENST00000231706 10103 ntAPPRIS P1 TSL 2 BASIC6.89□□□□□ -1.31
COL8A1P27658 HGD-201ENST00000283871 2005 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
COL8A1P27658 MOBP-201ENST00000311042 3388 ntAPPRIS ALT2 TSL 2 BASIC6.89□□□□□ -1.31
COL8A1P27658 PRCP-202ENST00000393399 2120 ntTSL 2 BASIC6.89□□□□□ -1.31
COL8A1P27658 ATP13A4-201ENST00000295548 2157 ntTSL 5 BASIC6.89□□□□□ -1.31
COL8A1P27658 UTY-202ENST00000331397 6529 ntAPPRIS ALT2 TSL 1 (best) BASIC6.89□□□□□ -1.31
COL8A1P27658 C2orf91-201ENST00000378711 3721 ntAPPRIS P2 TSL 2 BASIC6.89□□□□□ -1.31
COL8A1P27658 SPX-201ENST00000256969 2269 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
COL8A1P27658 LIMCH1-201ENST00000313860 6165 ntAPPRIS P3 TSL 1 (best) BASIC6.89□□□□□ -1.31
COL8A1P27658 ZNF611-203ENST00000540744 4417 ntAPPRIS P1 TSL 4 BASIC6.89□□□□□ -1.31
COL8A1P27658 CTNNA2-217ENST00000540488 2792 ntTSL 5 BASIC6.89□□□□□ -1.31
COL8A1P27658 PREPL-204ENST00000409272 3030 ntAPPRIS P1 TSL 2 BASIC6.89□□□□□ -1.31
COL8A1P27658 HNRNPA1P54-201ENST00000411857 9714 ntBASIC6.89□□□□□ -1.31
COL8A1P27658 MAPK8-201ENST00000360332 5438 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
COL8A1P27658 IMPG1-204ENST00000611179 3324 ntAPPRIS ALT2 TSL 5 BASIC6.89□□□□□ -1.31
COL8A1P27658 ABCC4-201ENST00000376887 5839 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
COL8A1P27658 PHF21A-201ENST00000323180 3675 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
COL8A1P27658 OR2W1-201ENST00000377175 1028 ntAPPRIS P1 BASIC6.89□□□□□ -1.31
COL8A1P27658 EEF1AKMT1-202ENST00000382758 1042 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
COL8A1P27658 LINC02449-202ENST00000399866 517 ntTSL 3 BASIC6.89□□□□□ -1.31
COL8A1P27658 AL356057.3-201ENST00000402607 340 ntBASIC6.89□□□□□ -1.31
COL8A1P27658 SOD1P1-201ENST00000407803 440 ntBASIC6.89□□□□□ -1.31
COL8A1P27658 Y_RNA.618-201ENST00000410949 107 ntBASIC6.89□□□□□ -1.31
COL8A1P27658 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
COL8A1P27658 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC6.89□□□□□ -1.31
COL8A1P27658 AC009498.1-201ENST00000419860 541 ntTSL 4 BASIC6.89□□□□□ -1.31
COL8A1P27658 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC6.89□□□□□ -1.31
COL8A1P27658 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC6.89□□□□□ -1.31
COL8A1P27658 GTF2IP23-201ENST00000423746 351 ntBASIC6.89□□□□□ -1.31
COL8A1P27658 CBX3P6-201ENST00000430257 527 ntBASIC6.89□□□□□ -1.31
COL8A1P27658 AL365184.2-201ENST00000431139 435 ntBASIC6.89□□□□□ -1.31
COL8A1P27658 AL365400.1-201ENST00000431854 640 ntBASIC6.89□□□□□ -1.31
COL8A1P27658 AC242426.1-201ENST00000435270 960 ntBASIC6.89□□□□□ -1.31
COL8A1P27658 AL451074.3-201ENST00000437709 472 ntBASIC6.89□□□□□ -1.31
COL8A1P27658 SDCBPP1-201ENST00000440192 890 ntBASIC6.89□□□□□ -1.31
COL8A1P27658 AL773572.1-202ENST00000440221 1004 ntTSL 3 BASIC6.89□□□□□ -1.31
COL8A1P27658 GAPDHP17-201ENST00000449858 1001 ntBASIC6.89□□□□□ -1.31
COL8A1P27658 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC6.89□□□□□ -1.31
COL8A1P27658 AL033528.1-201ENST00000453780 140 ntBASIC6.89□□□□□ -1.31
COL8A1P27658 AC115223.1-201ENST00000466377 870 ntBASIC6.89□□□□□ -1.31
COL8A1P27658 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC6.89□□□□□ -1.31
COL8A1P27658 AC122718.2-201ENST00000505325 591 ntBASIC6.89□□□□□ -1.31
COL8A1P27658 SCARNA11.1-201ENST00000516918 132 ntBASIC6.89□□□□□ -1.31
COL8A1P27658 AC021733.2-201ENST00000518830 497 ntBASIC6.89□□□□□ -1.31
COL8A1P27658 OPRK1-204ENST00000524278 1195 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
COL8A1P27658 AC104031.1-201ENST00000527726 372 ntTSL 2 BASIC6.89□□□□□ -1.31
COL8A1P27658 AC023442.1-201ENST00000531247 422 ntBASIC6.89□□□□□ -1.31
COL8A1P27658 OR4C9P-201ENST00000532368 925 ntBASIC6.89□□□□□ -1.31
COL8A1P27658 AC024405.1-201ENST00000532521 1042 ntBASIC6.89□□□□□ -1.31
COL8A1P27658 CCDC60-204ENST00000539847 581 ntAPPRIS ALT2 TSL 3 BASIC6.89□□□□□ -1.31
COL8A1P27658 AC018630.1-201ENST00000541376 925 ntBASIC6.89□□□□□ -1.31
COL8A1P27658 OR9A4-201ENST00000548136 1093 ntAPPRIS P1 BASIC6.89□□□□□ -1.31
COL8A1P27658 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC6.89□□□□□ -1.31
COL8A1P27658 LINC00640-201ENST00000554409 498 ntTSL 3 BASIC6.89□□□□□ -1.31
COL8A1P27658 AL049780.1-201ENST00000554430 489 ntTSL 3 BASIC6.89□□□□□ -1.31
COL8A1P27658 AC010333.1-201ENST00000563116 563 ntTSL 4 BASIC6.89□□□□□ -1.31
COL8A1P27658 TAPT1-AS1-203ENST00000573950 510 ntTSL 3 BASIC6.89□□□□□ -1.31
COL8A1P27658 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC6.89□□□□□ -1.31
COL8A1P27658 PRR13P5-201ENST00000596581 442 ntBASIC6.89□□□□□ -1.31
COL8A1P27658 AC019257.2-201ENST00000605539 497 ntBASIC6.89□□□□□ -1.31
COL8A1P27658 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
COL8A1P27658 AC012603.1-201ENST00000606424 528 ntBASIC6.89□□□□□ -1.31
COL8A1P27658 AL031281.2-201ENST00000606754 748 ntBASIC6.89□□□□□ -1.31
COL8A1P27658 AL133351.5-201ENST00000612789 106 ntBASIC6.89□□□□□ -1.31
COL8A1P27658 MLECP1-201ENST00000615893 709 ntBASIC6.89□□□□□ -1.31
COL8A1P27658 AC087588.2-201ENST00000617667 426 ntBASIC6.89□□□□□ -1.31
COL8A1P27658 LINC01125-248ENST00000627284 700 ntAPPRIS ALT2 TSL 5 BASIC6.89□□□□□ -1.31
COL8A1P27658 AC006453.3-201ENST00000635891 377 ntBASIC6.89□□□□□ -1.31
COL8A1P27658 STRADA-246ENST00000640397 1045 ntTSL 5 BASIC6.89□□□□□ -1.31
COL8A1P27658 LDB3-201ENST00000263066 3873 ntAPPRIS ALT2 TSL 1 (best) BASIC6.89□□□□□ -1.31
COL8A1P27658 EEF1A1P30-201ENST00000429708 1315 ntBASIC6.89□□□□□ -1.31
COL8A1P27658 C1orf131-203ENST00000366651 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC6.89□□□□□ -1.31
COL8A1P27658 AC068733.2-201ENST00000605434 1418 ntBASIC6.89□□□□□ -1.31
COL8A1P27658 RGS6-204ENST00000404301 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC6.89□□□□□ -1.31
COL8A1P27658 RGS6-206ENST00000407322 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC6.89□□□□□ -1.31
COL8A1P27658 TNFSF11-202ENST00000358545 1520 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
COL8A1P27658 ZNF735-201ENST00000429565 1570 ntAPPRIS P1 TSL 5 BASIC6.89□□□□□ -1.31
COL8A1P27658 CPEB4-209ENST00000522336 1551 ntTSL 5 BASIC6.89□□□□□ -1.31
COL8A1P27658 ERG-208ENST00000417133 5023 ntAPPRIS ALT1 TSL 2 BASIC6.89□□□□□ -1.31
COL8A1P27658 KARSP1-201ENST00000451871 1752 ntBASIC6.89□□□□□ -1.31
COL8A1P27658 NCBP3-201ENST00000389005 12770 ntAPPRIS P1 TSL 5 BASIC6.89□□□□□ -1.31
COL8A1P27658 ZNF812P-202ENST00000536819 1890 ntTSL 2 BASIC6.89□□□□□ -1.31
COL8A1P27658 FCGR3B-209ENST00000614870 1993 ntTSL 5 BASIC6.89□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 69.9 ms