Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AC141002.1-201ENST00000607025 279 ntBASIC7.9□□□□□ -1.14
CHMP4AQ9BY43 AL021368.3-201ENST00000607119 578 ntBASIC7.9□□□□□ -1.14
CHMP4AQ9BY43 AC019131.2-201ENST00000609071 870 ntBASIC7.9□□□□□ -1.14
CHMP4AQ9BY43 CCL23-201ENST00000612516 569 ntAPPRIS ALT2 TSL 1 (best) BASIC7.9□□□□□ -1.14
CHMP4AQ9BY43 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.14
CHMP4AQ9BY43 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC7.9□□□□□ -1.15
CHMP4AQ9BY43 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.15
CHMP4AQ9BY43 GTDC1-204ENST00000392869 10514 ntAPPRIS P1 TSL 5 BASIC7.9□□□□□ -1.15
CHMP4AQ9BY43 NDUFS1-205ENST00000449699 2371 ntAPPRIS P1 TSL 2 BASIC7.9□□□□□ -1.15
CHMP4AQ9BY43 YPEL5-201ENST00000261353 2182 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.15
CHMP4AQ9BY43 AC005674.2-201ENST00000561486 3510 ntTSL 1 (best) BASIC7.9□□□□□ -1.15
CHMP4AQ9BY43 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC7.9□□□□□ -1.15
CHMP4AQ9BY43 CTBS-202ENST00000370630 6600 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
CHMP4AQ9BY43 SEM1-202ENST00000356686 2667 ntTSL 5 BASIC7.89□□□□□ -1.15
CHMP4AQ9BY43 ALG11-202ENST00000521508 2558 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
CHMP4AQ9BY43 ZNF532-201ENST00000336078 6696 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
CHMP4AQ9BY43 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC7.89□□□□□ -1.15
CHMP4AQ9BY43 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC7.89□□□□□ -1.15
CHMP4AQ9BY43 KCNJ15-201ENST00000328656 8399 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
CHMP4AQ9BY43 CBLB-205ENST00000407712 1493 ntTSL 2 BASIC7.89□□□□□ -1.15
CHMP4AQ9BY43 PDZRN4-201ENST00000298919 3411 ntTSL 2 BASIC7.89□□□□□ -1.15
CHMP4AQ9BY43 PTPN3-202ENST00000374541 6703 ntAPPRIS P1 TSL 5 BASIC7.89□□□□□ -1.15
CHMP4AQ9BY43 IMMTP1-201ENST00000435590 2219 ntBASIC7.89□□□□□ -1.15
CHMP4AQ9BY43 RNU6-386P-201ENST00000362650 107 ntBASIC7.89□□□□□ -1.15
CHMP4AQ9BY43 OR2L2-201ENST00000366479 1134 ntAPPRIS P1 BASIC7.89□□□□□ -1.15
CHMP4AQ9BY43 TRAV1-2-201ENST00000390423 402 ntAPPRIS P1 BASIC7.89□□□□□ -1.15
CHMP4AQ9BY43 TBC1D32-204ENST00000398212 3824 ntAPPRIS P2 TSL 5 BASIC7.89□□□□□ -1.15
CHMP4AQ9BY43 RPL10P10-201ENST00000403509 664 ntBASIC7.89□□□□□ -1.15
CHMP4AQ9BY43 MTND4LP17-201ENST00000414607 293 ntBASIC7.89□□□□□ -1.15
CHMP4AQ9BY43 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC7.89□□□□□ -1.15
CHMP4AQ9BY43 AC079922.1-201ENST00000443291 359 ntBASIC7.89□□□□□ -1.15
CHMP4AQ9BY43 AL731661.2-201ENST00000448824 806 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
CHMP4AQ9BY43 RAB28P2-201ENST00000454299 641 ntBASIC7.89□□□□□ -1.15
CHMP4AQ9BY43 AC114728.1-201ENST00000488289 483 ntBASIC7.89□□□□□ -1.15
CHMP4AQ9BY43 AC083795.1-201ENST00000491760 320 ntBASIC7.89□□□□□ -1.15
CHMP4AQ9BY43 AC020937.1-201ENST00000519677 1013 ntBASIC7.89□□□□□ -1.15
CHMP4AQ9BY43 AC011632.2-201ENST00000520696 738 ntTSL 3 BASIC7.89□□□□□ -1.15
CHMP4AQ9BY43 OR8X1P-201ENST00000534542 869 ntBASIC7.89□□□□□ -1.15
CHMP4AQ9BY43 AC089998.2-201ENST00000551856 277 ntTSL 3 BASIC7.89□□□□□ -1.15
CHMP4AQ9BY43 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC7.89□□□□□ -1.15
CHMP4AQ9BY43 AC027229.1-201ENST00000583887 253 ntBASIC7.89□□□□□ -1.15
CHMP4AQ9BY43 AC091167.5-201ENST00000605689 894 ntBASIC7.89□□□□□ -1.15
CHMP4AQ9BY43 AL445465.1-206ENST00000609544 528 ntTSL 5 BASIC7.89□□□□□ -1.15
CHMP4AQ9BY43 Six3os1_2.1-201ENST00000616963 217 ntBASIC7.89□□□□□ -1.15
CHMP4AQ9BY43 ELSPBP1-206ENST00000619003 893 ntAPPRIS ALT2 TSL 5 BASIC7.89□□□□□ -1.15
CHMP4AQ9BY43 AL512652.1-201ENST00000619006 500 ntBASIC7.89□□□□□ -1.15
CHMP4AQ9BY43 SPATA2P1-201ENST00000431223 2055 ntBASIC7.89□□□□□ -1.15
CHMP4AQ9BY43 NSD3-206ENST00000527502 4471 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
CHMP4AQ9BY43 AC079753.1-201ENST00000623243 3868 ntBASIC7.89□□□□□ -1.15
CHMP4AQ9BY43 OAS2-201ENST00000342315 3613 ntAPPRIS P3 TSL 1 (best) BASIC7.89□□□□□ -1.15
CHMP4AQ9BY43 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC7.89□□□□□ -1.15
CHMP4AQ9BY43 AC022325.1-201ENST00000502748 2199 ntBASIC7.88□□□□□ -1.15
CHMP4AQ9BY43 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.15
CHMP4AQ9BY43 GRIK1-201ENST00000327783 3179 ntTSL 5 BASIC7.88□□□□□ -1.15
CHMP4AQ9BY43 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC7.88□□□□□ -1.15
CHMP4AQ9BY43 ZCCHC6-206ENST00000375963 5379 ntAPPRIS P1 TSL 5 BASIC7.88□□□□□ -1.15
CHMP4AQ9BY43 ZNF227-202ENST00000391961 2993 ntTSL 4 BASIC7.88□□□□□ -1.15
CHMP4AQ9BY43 OSBPL9-205ENST00000447887 2940 ntTSL 2 BASIC7.88□□□□□ -1.15
CHMP4AQ9BY43 RN7SKP275-201ENST00000364626 301 ntBASIC7.88□□□□□ -1.15
CHMP4AQ9BY43 ECHDC1-202ENST00000368289 909 ntTSL 5 BASIC7.88□□□□□ -1.15
CHMP4AQ9BY43 AC004386.1-201ENST00000393214 761 ntBASIC7.88□□□□□ -1.15
CHMP4AQ9BY43 AL353662.1-201ENST00000439099 327 ntBASIC7.88□□□□□ -1.15
CHMP4AQ9BY43 RPL5P10-201ENST00000445207 894 ntBASIC7.88□□□□□ -1.15
CHMP4AQ9BY43 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC7.88□□□□□ -1.15
CHMP4AQ9BY43 AC103563.5-201ENST00000455643 364 ntBASIC7.88□□□□□ -1.15
CHMP4AQ9BY43 RN7SL221P-201ENST00000466190 281 ntBASIC7.88□□□□□ -1.15
CHMP4AQ9BY43 AC098847.1-201ENST00000473094 348 ntBASIC7.88□□□□□ -1.15
CHMP4AQ9BY43 OR56A7P-201ENST00000524865 941 ntBASIC7.88□□□□□ -1.15
CHMP4AQ9BY43 FAU-203ENST00000525297 355 ntTSL 5 BASIC7.88□□□□□ -1.15
CHMP4AQ9BY43 AP000873.2-205ENST00000529031 435 ntTSL 2 BASIC7.88□□□□□ -1.15
CHMP4AQ9BY43 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC7.88□□□□□ -1.15
CHMP4AQ9BY43 NDUFA5P11-201ENST00000567995 343 ntBASIC7.88□□□□□ -1.15
CHMP4AQ9BY43 AC138907.7-201ENST00000568972 358 ntTSL 5 BASIC7.88□□□□□ -1.15
CHMP4AQ9BY43 AC024361.3-201ENST00000570919 333 ntTSL 5 BASIC7.88□□□□□ -1.15
CHMP4AQ9BY43 NPM1P45-201ENST00000583151 559 ntBASIC7.88□□□□□ -1.15
CHMP4AQ9BY43 AC090415.2-201ENST00000584078 374 ntTSL 3 BASIC7.88□□□□□ -1.15
CHMP4AQ9BY43 AL354740.1-205ENST00000586413 1230 ntTSL 5 BASIC7.88□□□□□ -1.15
CHMP4AQ9BY43 AC003991.1-201ENST00000594469 484 ntTSL 5 BASIC7.88□□□□□ -1.15
CHMP4AQ9BY43 Z98949.1-210ENST00000597548 766 ntTSL 5 BASIC7.88□□□□□ -1.15
CHMP4AQ9BY43 AC011497.2-201ENST00000600255 639 ntBASIC7.88□□□□□ -1.15
CHMP4AQ9BY43 AL645933.2-201ENST00000606743 1207 ntBASIC7.88□□□□□ -1.15
CHMP4AQ9BY43 AC096861.1-201ENST00000616652 240 ntBASIC7.88□□□□□ -1.15
CHMP4AQ9BY43 AL137067.2-201ENST00000621202 131 ntBASIC7.88□□□□□ -1.15
CHMP4AQ9BY43 AP001005.3-201ENST00000622049 129 ntBASIC7.88□□□□□ -1.15
CHMP4AQ9BY43 SAMMSON-209ENST00000641222 1100 ntBASIC7.88□□□□□ -1.15
CHMP4AQ9BY43 SATB1-209ENST00000454909 3755 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.15
CHMP4AQ9BY43 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.15
CHMP4AQ9BY43 CDC42SE2-201ENST00000360515 3591 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.15
CHMP4AQ9BY43 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC7.88□□□□□ -1.15
CHMP4AQ9BY43 ZNF735-201ENST00000429565 1570 ntAPPRIS P1 TSL 5 BASIC7.88□□□□□ -1.15
CHMP4AQ9BY43 AC007159.1-201ENST00000566529 4706 ntBASIC7.88□□□□□ -1.15
CHMP4AQ9BY43 SHQ1P1-201ENST00000437111 1544 ntBASIC7.88□□□□□ -1.15
CHMP4AQ9BY43 HTR4-206ENST00000520086 2272 ntTSL 2 BASIC7.87□□□□□ -1.15
CHMP4AQ9BY43 RBMY1HP-201ENST00000382759 1389 ntBASIC7.87□□□□□ -1.15
CHMP4AQ9BY43 AC016747.4-201ENST00000462959 1383 ntTSL 2 BASIC7.87□□□□□ -1.15
CHMP4AQ9BY43 TRIM51GP-201ENST00000534741 1350 ntBASIC7.87□□□□□ -1.15
CHMP4AQ9BY43 RAB9B-201ENST00000243298 3748 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
CHMP4AQ9BY43 SBNO1-202ENST00000420886 10981 ntAPPRIS ALT1 TSL 1 (best) BASIC7.87□□□□□ -1.15
CHMP4AQ9BY43 C16orf87-202ENST00000394806 6640 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
CHMP4AQ9BY43 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC7.87□□□□□ -1.15
Retrieved 100 of 98,524 protein–RNA pairs in 132.6 ms