Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL5A1P20908 DPY19L2P2-203ENST00000435536 1858 ntBASIC5.55□□□□□ -1.52
COL5A1P20908 NUMB-201ENST00000355058 3342 ntAPPRIS ALT1 TSL 5 BASIC5.55□□□□□ -1.52
COL5A1P20908 CTNND1-216ENST00000527467 5071 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
COL5A1P20908 CTNND1-229ENST00000531014 5053 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
COL5A1P20908 LRRC37A9P-201ENST00000603850 5376 ntBASIC5.55□□□□□ -1.52
COL5A1P20908 UVRAG-205ENST00000528420 2463 ntTSL 2 BASIC5.55□□□□□ -1.52
COL5A1P20908 CASP5-208ENST00000526056 1344 ntTSL 5 BASIC5.55□□□□□ -1.52
COL5A1P20908 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC5.55□□□□□ -1.52
COL5A1P20908 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC5.55□□□□□ -1.52
COL5A1P20908 THADA-204ENST00000403856 6939 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
COL5A1P20908 ERI2-206ENST00000563117 2903 ntTSL 2 BASIC5.55□□□□□ -1.52
COL5A1P20908 RIPK1-202ENST00000380409 3864 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL5A1P20908 CACNA1E-209ENST00000621551 14886 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
COL5A1P20908 AC005224.3-201ENST00000584683 2140 ntBASIC5.55□□□□□ -1.52
COL5A1P20908 SERPINB11-205ENST00000544088 1846 ntAPPRIS P1 TSL 2 BASIC5.55□□□□□ -1.52
COL5A1P20908 OR52K1-202ENST00000641528 5456 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
COL5A1P20908 SSPO-201ENST00000378016 15589 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
COL5A1P20908 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL5A1P20908 SNORD8-201ENST00000363915 110 ntBASIC5.55□□□□□ -1.52
COL5A1P20908 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
COL5A1P20908 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL5A1P20908 AL590762.4-201ENST00000425885 253 ntBASIC5.55□□□□□ -1.52
COL5A1P20908 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC5.55□□□□□ -1.52
COL5A1P20908 AC008080.2-201ENST00000455149 577 ntTSL 4 BASIC5.55□□□□□ -1.52
COL5A1P20908 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC5.55□□□□□ -1.52
COL5A1P20908 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL5A1P20908 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC5.55□□□□□ -1.52
COL5A1P20908 RN7SL708P-201ENST00000580952 299 ntBASIC5.55□□□□□ -1.52
COL5A1P20908 FKBP1AP1-201ENST00000594588 318 ntBASIC5.55□□□□□ -1.52
COL5A1P20908 AC063977.5-201ENST00000601044 974 ntBASIC5.55□□□□□ -1.52
COL5A1P20908 MKL2-201ENST00000318282 8608 ntAPPRIS P3 TSL 5 BASIC5.55□□□□□ -1.52
COL5A1P20908 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL5A1P20908 MAPK10-338ENST00000641647 3362 ntBASIC5.55□□□□□ -1.52
COL5A1P20908 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL5A1P20908 CSNK1A1-205ENST00000515435 1856 ntTSL 5 BASIC5.54□□□□□ -1.52
COL5A1P20908 TMEM133-201ENST00000303130 1953 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
COL5A1P20908 ZNF840P-201ENST00000504759 1996 ntBASIC5.54□□□□□ -1.52
COL5A1P20908 ZNF532-224ENST00000591808 5171 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL5A1P20908 MCFD2-206ENST00000409800 3955 ntTSL 4 BASIC5.54□□□□□ -1.52
COL5A1P20908 TRPM6-204ENST00000449912 8244 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL5A1P20908 ANKRD46-201ENST00000335659 2649 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL5A1P20908 ZNF101P1-201ENST00000435701 1720 ntBASIC5.54□□□□□ -1.52
COL5A1P20908 AC023421.1-201ENST00000590535 1785 ntBASIC5.54□□□□□ -1.52
COL5A1P20908 STMN1-202ENST00000374291 867 ntAPPRIS P1 TSL 2 BASIC5.54□□□□□ -1.52
COL5A1P20908 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL5A1P20908 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
COL5A1P20908 RAB28P1-201ENST00000411517 641 ntBASIC5.54□□□□□ -1.52
COL5A1P20908 SOX9-AS1-202ENST00000414600 742 ntTSL 3 BASIC5.54□□□□□ -1.52
COL5A1P20908 TMEM246-AS1-202ENST00000425734 466 ntTSL 2 BASIC5.54□□□□□ -1.52
COL5A1P20908 OR52B5P-201ENST00000435337 951 ntBASIC5.54□□□□□ -1.52
COL5A1P20908 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC5.54□□□□□ -1.52
COL5A1P20908 EEF1B2P5-201ENST00000444820 548 ntBASIC5.54□□□□□ -1.52
COL5A1P20908 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC5.54□□□□□ -1.52
COL5A1P20908 LINC02492-201ENST00000502952 564 ntTSL 5 BASIC5.54□□□□□ -1.52
COL5A1P20908 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC5.54□□□□□ -1.52
COL5A1P20908 HSPE1P2-201ENST00000554777 306 ntBASIC5.54□□□□□ -1.52
COL5A1P20908 AC066613.1-201ENST00000559977 1053 ntTSL 2 BASIC5.54□□□□□ -1.52
COL5A1P20908 MIR4697-201ENST00000582977 78 ntBASIC5.54□□□□□ -1.52
COL5A1P20908 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC5.54□□□□□ -1.52
COL5A1P20908 AL049539.1-201ENST00000611964 459 ntBASIC5.54□□□□□ -1.52
COL5A1P20908 AL118522.2-201ENST00000616045 615 ntBASIC5.54□□□□□ -1.52
COL5A1P20908 OR52B5P-202ENST00000641118 1110 ntBASIC5.54□□□□□ -1.52
COL5A1P20908 AC026951.1-201ENST00000559530 2459 ntBASIC5.54□□□□□ -1.52
COL5A1P20908 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
COL5A1P20908 ARRDC3-201ENST00000265138 4188 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL5A1P20908 SGCD-202ENST00000435422 9755 ntAPPRIS ALT1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL5A1P20908 FGFR1OP-202ENST00000366847 14166 ntAPPRIS P4 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL5A1P20908 NBPF9-206ENST00000613969 4624 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
COL5A1P20908 MFSD4BP1-201ENST00000513330 1552 ntBASIC5.54□□□□□ -1.52
COL5A1P20908 RAB14-201ENST00000373840 4145 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL5A1P20908 PPP1R1C-201ENST00000280295 1636 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
COL5A1P20908 SPRY3-201ENST00000302805 9019 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL5A1P20908 TSHR-201ENST00000298171 4400 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL5A1P20908 PTPRT-209ENST00000612229 11285 ntTSL 5 BASIC5.54□□□□□ -1.52
COL5A1P20908 SLC17A8-201ENST00000323346 3983 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL5A1P20908 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL5A1P20908 HYDIN2-203ENST00000614586 13885 ntBASIC5.53□□□□□ -1.52
COL5A1P20908 MIPOL1-201ENST00000327441 7185 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL5A1P20908 RN7SKP28-201ENST00000364770 305 ntBASIC5.53□□□□□ -1.52
COL5A1P20908 OR2J1-201ENST00000377171 1273 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
COL5A1P20908 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC5.53□□□□□ -1.52
COL5A1P20908 RNU6ATAC18P-201ENST00000408413 101 ntBASIC5.53□□□□□ -1.52
COL5A1P20908 RN7SKP279-201ENST00000411383 298 ntBASIC5.53□□□□□ -1.52
COL5A1P20908 RPS6P23-201ENST00000413224 722 ntBASIC5.53□□□□□ -1.52
COL5A1P20908 AL008723.2-201ENST00000426354 562 ntTSL 4 BASIC5.53□□□□□ -1.52
COL5A1P20908 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC5.53□□□□□ -1.52
COL5A1P20908 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC5.53□□□□□ -1.52
COL5A1P20908 AZGP1P2-201ENST00000454506 345 ntBASIC5.53□□□□□ -1.52
COL5A1P20908 SLC25A51P1-201ENST00000468432 871 ntBASIC5.53□□□□□ -1.52
COL5A1P20908 RPSAP50-201ENST00000481955 852 ntBASIC5.53□□□□□ -1.52
COL5A1P20908 RPEP1-201ENST00000504507 658 ntBASIC5.53□□□□□ -1.52
COL5A1P20908 AC021678.3-201ENST00000517893 476 ntBASIC5.53□□□□□ -1.52
COL5A1P20908 AP000676.2-201ENST00000529711 301 ntBASIC5.53□□□□□ -1.52
COL5A1P20908 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC5.53□□□□□ -1.52
COL5A1P20908 OR9A4-201ENST00000548136 1093 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
COL5A1P20908 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC5.53□□□□□ -1.52
COL5A1P20908 AC106730.2-201ENST00000566641 540 ntBASIC5.53□□□□□ -1.52
COL5A1P20908 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC5.53□□□□□ -1.52
COL5A1P20908 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC5.53□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 1517.1 ms