Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC7.62□□□□□ -1.19
HOXC9P31274 HRAT17-202ENST00000451962 687 ntTSL 5 BASIC7.62□□□□□ -1.19
HOXC9P31274 OR5M14P-201ENST00000506803 618 ntBASIC7.62□□□□□ -1.19
HOXC9P31274 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC7.62□□□□□ -1.19
HOXC9P31274 AC116424.1-203ENST00000513940 671 ntTSL 3 BASIC7.62□□□□□ -1.19
HOXC9P31274 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC7.62□□□□□ -1.19
HOXC9P31274 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC7.62□□□□□ -1.19
HOXC9P31274 AC243571.1-201ENST00000615743 478 ntTSL 3 BASIC7.62□□□□□ -1.19
HOXC9P31274 AC132068.1-201ENST00000623805 459 ntBASIC7.62□□□□□ -1.19
HOXC9P31274 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC7.62□□□□□ -1.19
HOXC9P31274 DSC1-202ENST00000257198 4225 ntAPPRIS P4 TSL 2 BASIC7.62□□□□□ -1.19
HOXC9P31274 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
HOXC9P31274 ZNF106-201ENST00000263805 10460 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
HOXC9P31274 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
HOXC9P31274 ZCCHC6-206ENST00000375963 5379 ntAPPRIS P1 TSL 5 BASIC7.62□□□□□ -1.19
HOXC9P31274 MFSD8-239ENST00000641590 2479 ntBASIC7.62□□□□□ -1.19
HOXC9P31274 ZNF283-203ENST00000588797 2428 ntTSL 2 BASIC7.62□□□□□ -1.19
HOXC9P31274 AC079777.1-201ENST00000623836 1953 ntBASIC7.62□□□□□ -1.19
HOXC9P31274 PEAK1-202ENST00000558305 4644 ntTSL 4 BASIC7.62□□□□□ -1.19
HOXC9P31274 LRRC37B-204ENST00000543378 3091 ntAPPRIS ALT2 TSL 2 BASIC7.62□□□□□ -1.19
HOXC9P31274 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC7.62□□□□□ -1.19
HOXC9P31274 CNKSR3-205ENST00000607772 21063 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
HOXC9P31274 AC010168.2-201ENST00000562691 5428 ntBASIC7.61□□□□□ -1.19
HOXC9P31274 MLLT10-217ENST00000631589 4955 ntAPPRIS ALT2 TSL 5 BASIC7.61□□□□□ -1.19
HOXC9P31274 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC7.61□□□□□ -1.19
HOXC9P31274 FRS2-209ENST00000550389 6600 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
HOXC9P31274 AP004607.3-201ENST00000530354 3915 ntBASIC7.61□□□□□ -1.19
HOXC9P31274 OR2G3-201ENST00000320002 930 ntAPPRIS P1 BASIC7.61□□□□□ -1.19
HOXC9P31274 PLSCR2-201ENST00000336685 1272 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
HOXC9P31274 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC7.61□□□□□ -1.19
HOXC9P31274 RNA5SP319-201ENST00000362768 119 ntBASIC7.61□□□□□ -1.19
HOXC9P31274 RN7SKP28-201ENST00000364770 305 ntBASIC7.61□□□□□ -1.19
HOXC9P31274 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC7.61□□□□□ -1.19
HOXC9P31274 FIGN-202ENST00000409634 746 ntTSL 5 BASIC7.61□□□□□ -1.19
HOXC9P31274 KCNJ13-202ENST00000409779 1099 ntTSL 2 BASIC7.61□□□□□ -1.19
HOXC9P31274 NT5C3A-206ENST00000409787 840 ntTSL 2 BASIC7.61□□□□□ -1.19
HOXC9P31274 RPL6P21-201ENST00000418672 846 ntBASIC7.61□□□□□ -1.19
HOXC9P31274 LINC00458-201ENST00000423442 1060 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
HOXC9P31274 NANOGP4-201ENST00000427230 913 ntBASIC7.61□□□□□ -1.19
HOXC9P31274 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC7.61□□□□□ -1.19
HOXC9P31274 GAPDHP58-201ENST00000438477 1006 ntBASIC7.61□□□□□ -1.19
HOXC9P31274 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC7.61□□□□□ -1.19
HOXC9P31274 OR2AO1P-201ENST00000476497 403 ntBASIC7.61□□□□□ -1.19
HOXC9P31274 RPS4XP1-201ENST00000482189 787 ntBASIC7.61□□□□□ -1.19
HOXC9P31274 AC004815.1-201ENST00000484185 331 ntBASIC7.61□□□□□ -1.19
HOXC9P31274 RN7SL30P-201ENST00000488416 306 ntBASIC7.61□□□□□ -1.19
HOXC9P31274 LINC00518-204ENST00000491317 1228 ntTSL 2 BASIC7.61□□□□□ -1.19
HOXC9P31274 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC7.61□□□□□ -1.19
HOXC9P31274 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC7.61□□□□□ -1.19
HOXC9P31274 LINC02129-201ENST00000564381 692 ntTSL 5 BASIC7.61□□□□□ -1.19
HOXC9P31274 AC007346.2-201ENST00000564816 892 ntBASIC7.61□□□□□ -1.19
HOXC9P31274 AC018557.2-201ENST00000565082 536 ntTSL 5 BASIC7.61□□□□□ -1.19
HOXC9P31274 AC022211.1-201ENST00000579554 717 ntTSL 3 BASIC7.61□□□□□ -1.19
HOXC9P31274 TTN-AS1-219ENST00000586707 834 ntTSL 5 BASIC7.61□□□□□ -1.19
HOXC9P31274 AL683813.2-201ENST00000605245 502 ntBASIC7.61□□□□□ -1.19
HOXC9P31274 AC092944.2-201ENST00000605443 889 ntBASIC7.61□□□□□ -1.19
HOXC9P31274 AL512329.2-201ENST00000607350 548 ntBASIC7.61□□□□□ -1.19
HOXC9P31274 AC008115.4-201ENST00000619780 775 ntBASIC7.61□□□□□ -1.19
HOXC9P31274 MIR6837-201ENST00000620884 64 ntBASIC7.61□□□□□ -1.19
HOXC9P31274 OR52N1-202ENST00000641645 2545 ntAPPRIS P1 BASIC7.61□□□□□ -1.19
HOXC9P31274 AL161912.4-201ENST00000623889 2468 ntBASIC7.61□□□□□ -1.19
HOXC9P31274 SCN2A-215ENST00000637266 8610 ntAPPRIS ALT1 TSL 5 BASIC7.61□□□□□ -1.19
HOXC9P31274 ZNF208-201ENST00000397126 3992 ntAPPRIS P1 TSL 3 BASIC7.61□□□□□ -1.19
HOXC9P31274 CLCN3-211ENST00000613795 5874 ntTSL 5 BASIC7.61□□□□□ -1.19
HOXC9P31274 LMO3-235ENST00000616247 3227 ntTSL 5 BASIC7.61□□□□□ -1.19
HOXC9P31274 ZNF436-201ENST00000314011 4071 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
HOXC9P31274 TRPM7-201ENST00000313478 10400 ntAPPRIS P3 TSL 1 (best) BASIC7.61□□□□□ -1.19
HOXC9P31274 ZNF521-203ENST00000538137 4253 ntAPPRIS P1 TSL 2 BASIC7.61□□□□□ -1.19
HOXC9P31274 RAB3B-201ENST00000371655 12844 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
HOXC9P31274 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
HOXC9P31274 IKZF3-210ENST00000377958 1837 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
HOXC9P31274 STAG1-201ENST00000236698 5951 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
HOXC9P31274 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC7.6□□□□□ -1.19
HOXC9P31274 SMIM21-203ENST00000584508 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC7.6□□□□□ -1.19
HOXC9P31274 RBMS3-AS2-201ENST00000366321 582 ntTSL 3 BASIC7.6□□□□□ -1.19
HOXC9P31274 MRM2-202ENST00000407040 582 ntTSL 3 BASIC7.6□□□□□ -1.19
HOXC9P31274 UBE2L5P-201ENST00000436446 465 ntAPPRIS P1 BASIC7.6□□□□□ -1.19
HOXC9P31274 NPSR1-AS1-206ENST00000439852 710 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
HOXC9P31274 RPS26P41-201ENST00000450370 284 ntBASIC7.6□□□□□ -1.19
HOXC9P31274 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC7.6□□□□□ -1.19
HOXC9P31274 RNU1-88P-201ENST00000459274 128 ntBASIC7.6□□□□□ -1.19
HOXC9P31274 PGAM1P13-201ENST00000507497 754 ntBASIC7.6□□□□□ -1.19
HOXC9P31274 HIGD1AP14-201ENST00000507617 282 ntBASIC7.6□□□□□ -1.19
HOXC9P31274 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC7.6□□□□□ -1.19
HOXC9P31274 AC010230.1-201ENST00000514115 443 ntTSL 3 BASIC7.6□□□□□ -1.19
HOXC9P31274 KLRD1-209ENST00000543420 802 ntTSL 5 BASIC7.6□□□□□ -1.19
HOXC9P31274 AL137246.1-201ENST00000607072 977 ntBASIC7.6□□□□□ -1.19
HOXC9P31274 AC004948.1-201ENST00000609858 672 ntBASIC7.6□□□□□ -1.19
HOXC9P31274 AC090607.5-201ENST00000615692 224 ntBASIC7.6□□□□□ -1.19
HOXC9P31274 AL136359.1-201ENST00000625090 565 ntTSL 2 BASIC7.6□□□□□ -1.19
HOXC9P31274 SAMMSON-227ENST00000642114 1199 ntBASIC7.6□□□□□ -1.19
HOXC9P31274 UGDH-205ENST00000506179 3021 ntAPPRIS P1 TSL 5 BASIC7.6□□□□□ -1.19
HOXC9P31274 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
HOXC9P31274 NFIB-218ENST00000636432 1953 ntTSL 5 BASIC7.6□□□□□ -1.19
HOXC9P31274 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC7.6□□□□□ -1.19
HOXC9P31274 CSNK1G1-204ENST00000606793 1658 ntTSL 5 BASIC7.6□□□□□ -1.19
HOXC9P31274 TTC21B-201ENST00000243344 5482 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
HOXC9P31274 MTHFD2L-207ENST00000433372 1407 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
HOXC9P31274 OLMALINC-203ENST00000641087 3779 ntBASIC7.6□□□□□ -1.19
HOXC9P31274 ITGA1-201ENST00000282588 10757 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms