Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 MSANTD3-TMEFF1-201ENST00000502978 2069 ntAPPRIS P1 TSL 2 BASIC8.45□□□□□ -1.06
COL9A1P20849 OR2M4-202ENST00000641868 5934 ntAPPRIS P1 BASIC8.45□□□□□ -1.06
COL9A1P20849 DCTN1-205ENST00000409567 4024 ntAPPRIS ALT2 TSL 1 (best) BASIC8.45□□□□□ -1.06
COL9A1P20849 THADA-206ENST00000405006 6310 ntAPPRIS P1 TSL 1 (best) BASIC8.45□□□□□ -1.06
COL9A1P20849 SPEN-201ENST00000375759 12232 ntAPPRIS P1 TSL 1 (best) BASIC8.45□□□□□ -1.06
COL9A1P20849 NEUROD6-201ENST00000297142 2131 ntAPPRIS P1 TSL 1 (best) BASIC8.45□□□□□ -1.06
COL9A1P20849 RHOXF1-AS1-201ENST00000553843 2102 ntTSL 2 BASIC8.45□□□□□ -1.06
COL9A1P20849 SNCA-206ENST00000420646 3127 ntTSL 2 BASIC8.45□□□□□ -1.06
COL9A1P20849 MTF2-201ENST00000370298 4125 ntAPPRIS P1 TSL 1 (best) BASIC8.45□□□□□ -1.06
COL9A1P20849 ADGRE2-201ENST00000315576 6767 ntAPPRIS P3 TSL 1 (best) BASIC8.45□□□□□ -1.06
COL9A1P20849 ZNF300P1-201ENST00000356555 1822 ntBASIC8.45□□□□□ -1.06
COL9A1P20849 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC8.45□□□□□ -1.06
COL9A1P20849 S1PR3-202ENST00000375846 8505 ntAPPRIS P1 BASIC8.45□□□□□ -1.06
COL9A1P20849 C2orf42-205ENST00000420306 2193 ntAPPRIS P1 TSL 2 BASIC8.45□□□□□ -1.06
COL9A1P20849 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC8.45□□□□□ -1.06
COL9A1P20849 GREB1L-201ENST00000269218 5600 ntTSL 5 BASIC8.45□□□□□ -1.06
COL9A1P20849 PPIA-204ENST00000468812 2238 ntAPPRIS P1 TSL 1 (best) BASIC8.45□□□□□ -1.06
COL9A1P20849 LINC01206-202ENST00000474045 2240 ntTSL 5 BASIC8.45□□□□□ -1.06
COL9A1P20849 LMLN-201ENST00000330198 7043 ntTSL 1 (best) BASIC8.45□□□□□ -1.06
COL9A1P20849 KLHL5-203ENST00000381930 3288 ntTSL 1 (best) BASIC8.45□□□□□ -1.06
COL9A1P20849 CALD1-201ENST00000361675 3612 ntAPPRIS P1 TSL 1 (best) BASIC8.45□□□□□ -1.06
COL9A1P20849 DNAJC27-AS1-205ENST00000434897 4660 ntTSL 1 (best) BASIC8.45□□□□□ -1.06
COL9A1P20849 IL20-202ENST00000367098 1553 ntAPPRIS P1 TSL 1 (best) BASIC8.45□□□□□ -1.06
COL9A1P20849 SORL1-211ENST00000532694 3692 ntTSL 2 BASIC8.45□□□□□ -1.06
COL9A1P20849 BRD7P1-201ENST00000557705 1915 ntBASIC8.45□□□□□ -1.06
COL9A1P20849 LIMCH1-215ENST00000512632 4792 ntAPPRIS ALT2 TSL 1 (best) BASIC8.45□□□□□ -1.06
COL9A1P20849 ESRP1-203ENST00000433389 3770 ntAPPRIS P4 TSL 1 (best) BASIC8.45□□□□□ -1.06
COL9A1P20849 CEP57-207ENST00000537677 1647 ntAPPRIS ALT2 TSL 5 BASIC8.45□□□□□ -1.06
COL9A1P20849 XCR1-201ENST00000309285 5281 ntAPPRIS P1 TSL 1 (best) BASIC8.45□□□□□ -1.06
COL9A1P20849 RNU1-35P-201ENST00000362782 153 ntBASIC8.45□□□□□ -1.06
COL9A1P20849 RN7SKP211-201ENST00000363328 315 ntBASIC8.45□□□□□ -1.06
COL9A1P20849 RN7SKP15-201ENST00000364742 309 ntBASIC8.45□□□□□ -1.06
COL9A1P20849 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC8.45□□□□□ -1.06
COL9A1P20849 MIR548F4-201ENST00000408515 105 ntBASIC8.45□□□□□ -1.06
COL9A1P20849 RPE-204ENST00000411934 792 ntTSL 1 (best) BASIC8.45□□□□□ -1.06
COL9A1P20849 AL160290.1-201ENST00000415509 416 ntTSL 3 BASIC8.45□□□□□ -1.06
COL9A1P20849 TMBIM7P-201ENST00000418074 855 ntBASIC8.45□□□□□ -1.06
COL9A1P20849 RPS27AP6-201ENST00000427962 448 ntBASIC8.45□□□□□ -1.06
COL9A1P20849 AL355483.4-201ENST00000432653 470 ntTSL 3 BASIC8.45□□□□□ -1.06
COL9A1P20849 AL773572.1-202ENST00000440221 1004 ntTSL 3 BASIC8.45□□□□□ -1.06
COL9A1P20849 RPS26P30-201ENST00000443431 335 ntBASIC8.45□□□□□ -1.06
COL9A1P20849 AL122008.4-201ENST00000446433 388 ntTSL 3 BASIC8.45□□□□□ -1.06
COL9A1P20849 LAPTM4BP1-201ENST00000447781 690 ntBASIC8.45□□□□□ -1.06
COL9A1P20849 OR7H1P-201ENST00000448965 922 ntBASIC8.45□□□□□ -1.06
COL9A1P20849 AC009244.1-201ENST00000450566 258 ntBASIC8.45□□□□□ -1.06
COL9A1P20849 NBPF2P-201ENST00000453025 661 ntBASIC8.45□□□□□ -1.06
COL9A1P20849 RBMY2EP-202ENST00000456360 940 ntBASIC8.45□□□□□ -1.06
COL9A1P20849 ALG13-214ENST00000482742 620 ntTSL 2 BASIC8.45□□□□□ -1.06
COL9A1P20849 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC8.45□□□□□ -1.06
COL9A1P20849 IFT122-215ENST00000507564 3824 ntTSL 1 (best) BASIC8.45□□□□□ -1.06
COL9A1P20849 MRPS35P2-201ENST00000508242 191 ntBASIC8.45□□□□□ -1.06
COL9A1P20849 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC8.45□□□□□ -1.06
COL9A1P20849 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC8.45□□□□□ -1.06
COL9A1P20849 RNU6-416P-201ENST00000516265 103 ntBASIC8.45□□□□□ -1.06
COL9A1P20849 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC8.45□□□□□ -1.06
COL9A1P20849 BTF3P12-201ENST00000519620 469 ntBASIC8.45□□□□□ -1.06
COL9A1P20849 AC022634.1-201ENST00000520765 532 ntBASIC8.45□□□□□ -1.06
COL9A1P20849 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC8.45□□□□□ -1.06
COL9A1P20849 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC8.45□□□□□ -1.06
COL9A1P20849 SMCO2-203ENST00000535986 1096 ntAPPRIS P2 TSL 5 BASIC8.45□□□□□ -1.06
COL9A1P20849 UBC-213ENST00000546120 718 ntTSL 5 BASIC8.45□□□□□ -1.06
COL9A1P20849 AL109766.1-201ENST00000555080 552 ntBASIC8.45□□□□□ -1.06
COL9A1P20849 C14orf2-211ENST00000557040 472 ntAPPRIS P1 TSL 3 BASIC8.45□□□□□ -1.06
COL9A1P20849 FRG2DP-202ENST00000566967 323 ntBASIC8.45□□□□□ -1.06
COL9A1P20849 MYL12BP1-201ENST00000569826 507 ntBASIC8.45□□□□□ -1.06
COL9A1P20849 AC090236.2-201ENST00000587933 1101 ntBASIC8.45□□□□□ -1.06
COL9A1P20849 AC011468.2-202ENST00000594362 579 ntTSL 5 BASIC8.45□□□□□ -1.06
COL9A1P20849 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC8.45□□□□□ -1.06
COL9A1P20849 AC016876.3-201ENST00000610459 426 ntBASIC8.45□□□□□ -1.06
COL9A1P20849 AC015819.1-201ENST00000613588 663 ntBASIC8.45□□□□□ -1.06
COL9A1P20849 MIR7109-201ENST00000613748 65 ntBASIC8.45□□□□□ -1.06
COL9A1P20849 SEM1-224ENST00000623693 729 ntTSL 5 BASIC8.45□□□□□ -1.06
COL9A1P20849 AL132796.3-201ENST00000624703 900 ntBASIC8.45□□□□□ -1.06
COL9A1P20849 AC063952.1-203ENST00000634410 658 ntBASIC8.45□□□□□ -1.06
COL9A1P20849 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC8.45□□□□□ -1.06
COL9A1P20849 TP63-202ENST00000320472 2032 ntTSL 1 (best) BASIC8.45□□□□□ -1.06
COL9A1P20849 POLR2D-201ENST00000272645 5042 ntAPPRIS P1 TSL 1 (best) BASIC8.45□□□□□ -1.06
COL9A1P20849 MAPK6PS2-201ENST00000379571 2060 ntBASIC8.45□□□□□ -1.06
COL9A1P20849 PSMC1P7-201ENST00000495689 1315 ntBASIC8.45□□□□□ -1.06
COL9A1P20849 CDC42SE2-208ENST00000505065 4352 ntAPPRIS P1 TSL 1 (best) BASIC8.45□□□□□ -1.06
COL9A1P20849 SULT1C2-205ENST00000437390 1359 ntTSL 2 BASIC8.45□□□□□ -1.06
COL9A1P20849 ENO1P4-201ENST00000416471 1785 ntBASIC8.45□□□□□ -1.06
COL9A1P20849 EPHA1-AS1-202ENST00000429289 5018 ntTSL 1 (best) BASIC8.45□□□□□ -1.06
COL9A1P20849 CHRNA6-205ENST00000534622 1872 ntTSL 2 BASIC8.45□□□□□ -1.06
COL9A1P20849 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC8.45□□□□□ -1.06
COL9A1P20849 MASP1-202ENST00000296280 4015 ntAPPRIS P4 TSL 1 (best) BASIC8.45□□□□□ -1.06
COL9A1P20849 PIGK-201ENST00000359130 1926 ntTSL 1 (best) BASIC8.44□□□□□ -1.06
COL9A1P20849 NELL2-202ENST00000395487 3203 ntTSL 1 (best) BASIC8.44□□□□□ -1.06
COL9A1P20849 ATL3-201ENST00000398868 7135 ntAPPRIS P3 TSL 1 (best) BASIC8.44□□□□□ -1.06
COL9A1P20849 SEC24A-202ENST00000398844 6299 ntAPPRIS P1 TSL 2 BASIC8.44□□□□□ -1.06
COL9A1P20849 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC8.44□□□□□ -1.06
COL9A1P20849 CHCHD5-202ENST00000409719 3272 ntTSL 2 BASIC8.44□□□□□ -1.06
COL9A1P20849 LINC02245-201ENST00000449259 2928 ntTSL 5 BASIC8.44□□□□□ -1.06
COL9A1P20849 LINC00210-201ENST00000431637 1584 ntTSL 1 (best) BASIC8.44□□□□□ -1.06
COL9A1P20849 TMPRSS4-AS1-204ENST00000636151 3397 ntAPPRIS P1 TSL 5 BASIC8.44□□□□□ -1.06
COL9A1P20849 OSBPL3-203ENST00000396431 2969 ntTSL 1 (best) BASIC8.44□□□□□ -1.06
COL9A1P20849 ZNF512-208ENST00000556601 3543 ntTSL 1 (best) BASIC8.44□□□□□ -1.06
COL9A1P20849 AL049839.2-201ENST00000553947 3067 ntAPPRIS P1 TSL 2 BASIC8.44□□□□□ -1.06
COL9A1P20849 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC8.44□□□□□ -1.06
COL9A1P20849 ALDH1L2-201ENST00000258494 7547 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.06
Retrieved 100 of 98,524 protein–RNA pairs in 73.5 ms