RNA–Protein interactions for RNA: ENST00000309285.3

XCR1-201, Transcript of X-C motif chemokine receptor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene XCR1, Length 5,281 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XCR1-201ENST00000309285 NISCHQ9Y2I1 1504 aa17.85■□□□□ 0.45
XCR1-201ENST00000309285 DCAF8L2P0C7V8 631 aa16.14■□□□□ 0.17
XCR1-201ENST00000309285 SHROOM4Q9ULL8 1493 aa15.87■□□□□ 0.13
XCR1-201ENST00000309285 SUPT5HO00267 1087 aaKnown RBP15.71■□□□□ 0.1
XCR1-201ENST00000309285 PELP1Q8IZL8 1130 aaKnown RBP14.97□□□□□ -0.01
XCR1-201ENST00000309285 ZCCHC6Q5VYS8 1495 aaKnown RBP14.95□□□□□ -0.02
XCR1-201ENST00000309285 CCDC180Q9P1Z9 1646 aa14.94□□□□□ -0.02
XCR1-201ENST00000309285 EHMT2Q96KQ7 1210 aa14.85□□□□□ -0.03
XCR1-201ENST00000309285 MYT1Q01538 1121 aa14.77□□□□□ -0.05
XCR1-201ENST00000309285 ABCC9O60706 1549 aa14.72□□□□□ -0.05
XCR1-201ENST00000309285 CHIC1Q5VXU3 224 aa14.71□□□□□ -0.05
XCR1-201ENST00000309285 FAM9AQ8IZU1 332 aaPredicted RBP14.63□□□□□ -0.07
XCR1-201ENST00000309285 TRIM41Q8WV44 630 aa14.57□□□□□ -0.08
XCR1-201ENST00000309285 PCGF6Q9BYE7 350 aa14.5□□□□□ -0.09
XCR1-201ENST00000309285 LOC105371045A0A1W2PR82 267 aa14.45□□□□□ -0.1
XCR1-201ENST00000309285 SCRIBQ14160 1630 aa14.43□□□□□ -0.1
XCR1-201ENST00000309285 DCAF1Q9Y4B6 1507 aa14.39□□□□□ -0.11
XCR1-201ENST00000309285 CENPBP07199 599 aaPredicted RBP14.3□□□□□ -0.12
XCR1-201ENST00000309285 PABPN1Q86U42 306 aaKnown RBP eCLIP14.3□□□□□ -0.12
XCR1-201ENST00000309285 TTBK1Q5TCY1 1321 aaPredicted RBP14.29□□□□□ -0.12
XCR1-201ENST00000309285 APLP2Q06481 763 aa14.27□□□□□ -0.13
XCR1-201ENST00000309285 ERICH6Q7L0X2 663 aa14.22□□□□□ -0.13
XCR1-201ENST00000309285 RSF1Q96T23 1441 aaPredicted RBP14.18□□□□□ -0.14
XCR1-201ENST00000309285 RANGAP1P46060 587 aaPredicted RBP14.16□□□□□ -0.14
XCR1-201ENST00000309285 MYO15BQ96JP2 1530 aa14.16□□□□□ -0.14
XCR1-201ENST00000309285 NACADO15069 1562 aa14.15□□□□□ -0.14
XCR1-201ENST00000309285 HRCP23327 699 aa14.14□□□□□ -0.15
XCR1-201ENST00000309285 CCER1Q8TC90 406 aaPredicted RBP14.11□□□□□ -0.15
XCR1-201ENST00000309285 PPARGC1BQ86YN6 1023 aaKnown RBP14.1□□□□□ -0.15
XCR1-201ENST00000309285 UBTFP17480 764 aaKnown RBP14.09□□□□□ -0.15
XCR1-201ENST00000309285 TRIM26Q12899 539 aaPredicted RBP14.08□□□□□ -0.16
XCR1-201ENST00000309285 RB1CC1Q8TDY2 1594 aa14.06□□□□□ -0.16
XCR1-201ENST00000309285 CECR2Q9BXF3 1484 aa14.04□□□□□ -0.16
XCR1-201ENST00000309285 ZEB1P37275 1124 aaPredicted RBP14.04□□□□□ -0.16
XCR1-201ENST00000309285 YTHDC1Q96MU7 727 aaKnown RBP14.01□□□□□ -0.17
XCR1-201ENST00000309285 ATP1B4Q9UN42 357 aaPredicted RBP13.98□□□□□ -0.17
XCR1-201ENST00000309285 MROH2BQ7Z745 1585 aa13.89□□□□□ -0.19
XCR1-201ENST00000309285 BAZ1AQ9NRL2 1556 aaPredicted RBP13.82□□□□□ -0.2
XCR1-201ENST00000309285 CSRNP3Q8WYN3 585 aa13.77□□□□□ -0.21
XCR1-201ENST00000309285 WIZO95785 1651 aa13.73□□□□□ -0.21
XCR1-201ENST00000309285 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.67□□□□□ -0.22
XCR1-201ENST00000309285 NEFLP07196 543 aa13.66□□□□□ -0.22
XCR1-201ENST00000309285 GTF3C3Q9Y5Q9 886 aa13.64□□□□□ -0.23
XCR1-201ENST00000309285 CCDC88BA6NC98 1476 aa13.63□□□□□ -0.23
XCR1-201ENST00000309285 HNRNPUL2Q1KMD3 747 aaKnown RBP13.62□□□□□ -0.23
XCR1-201ENST00000309285 BAZ1BQ9UIG0 1483 aaKnown RBP13.58□□□□□ -0.24
XCR1-201ENST00000309285 WRNQ14191 1432 aaPredicted RBP eCLIP13.56□□□□□ -0.24
XCR1-201ENST00000309285 ABCC8Q09428 1581 aa13.55□□□□□ -0.24
XCR1-201ENST00000309285 SMARCA4P51532 1647 aa13.55□□□□□ -0.24
XCR1-201ENST00000309285 TOP2AP11388 1531 aaKnown RBP13.54□□□□□ -0.24
XCR1-201ENST00000309285 SOGA1O94964 1423 aa13.51□□□□□ -0.25
XCR1-201ENST00000309285 MYT1LQ9UL68 1186 aa13.5□□□□□ -0.25
XCR1-201ENST00000309285 ITGAEP38570 1179 aa13.49□□□□□ -0.25
XCR1-201ENST00000309285 EEA1Q15075 1411 aa13.47□□□□□ -0.25
XCR1-201ENST00000309285 CEP162Q5TB80 1403 aa13.47□□□□□ -0.25
XCR1-201ENST00000309285 DIEXFQ68CQ4 756 aaKnown RBP13.43□□□□□ -0.26
XCR1-201ENST00000309285 ATAD2BQ9ULI0 1458 aa13.42□□□□□ -0.26
XCR1-201ENST00000309285 ACIN1Q9UKV3 1341 aaKnown RBP13.42□□□□□ -0.26
XCR1-201ENST00000309285 TNIKQ9UKE5 1360 aa13.41□□□□□ -0.26
XCR1-201ENST00000309285 POLR3GLQ9BT43 218 aa13.41□□□□□ -0.26
XCR1-201ENST00000309285 GOLGA3Q08378 1498 aa13.4□□□□□ -0.26
XCR1-201ENST00000309285 CNGB1Q14028 1251 aaPredicted RBP13.4□□□□□ -0.26
XCR1-201ENST00000309285 SMARCA2P51531 1590 aa13.39□□□□□ -0.27
XCR1-201ENST00000309285 CLIP1P30622 1438 aa13.38□□□□□ -0.27
XCR1-201ENST00000309285 SCAF1Q9H7N4 1312 aaKnown RBP13.37□□□□□ -0.27
XCR1-201ENST00000309285 P3H3Q8IVL6 736 aa13.34□□□□□ -0.27
XCR1-201ENST00000309285 CEP164Q9UPV0 1460 aa13.33□□□□□ -0.28
XCR1-201ENST00000309285 RUSC2Q8N2Y8 1516 aa13.33□□□□□ -0.28
XCR1-201ENST00000309285 DAXXQ9UER7 740 aaPredicted RBP13.32□□□□□ -0.28
XCR1-201ENST00000309285 RTL5Q5HYW3 569 aaPredicted RBP13.31□□□□□ -0.28
XCR1-201ENST00000309285 BICRAQ9NZM4 1560 aa13.29□□□□□ -0.28
XCR1-201ENST00000309285 BCANQ96GW7 911 aa13.28□□□□□ -0.28
XCR1-201ENST00000309285 FAM50AQ14320 339 aaKnown RBP13.27□□□□□ -0.29
XCR1-201ENST00000309285 KIF27Q86VH2 1401 aa13.25□□□□□ -0.29
XCR1-201ENST00000309285 UNC13AQ9UPW8 1703 aa13.23□□□□□ -0.29
XCR1-201ENST00000309285 NEUROD1Q13562 356 aa13.18□□□□□ -0.3
XCR1-201ENST00000309285 SLC4A1APQ9BWU0 796 aaKnown RBP13.17□□□□□ -0.3
XCR1-201ENST00000309285 EIF5BO60841 1220 aaKnown RBP13.15□□□□□ -0.3
XCR1-201ENST00000309285 RAPGEF2Q9Y4G8 1499 aa13.15□□□□□ -0.3
XCR1-201ENST00000309285 ZNF316A6NFI3 1004 aaPredicted RBP13.15□□□□□ -0.3
XCR1-201ENST00000309285 NCAPD3P42695 1498 aa13.14□□□□□ -0.31
XCR1-201ENST00000309285 CUX2O14529 1486 aa13.14□□□□□ -0.31
XCR1-201ENST00000309285 EIF4G1Q04637 1599 aaKnown RBP13.14□□□□□ -0.31
XCR1-201ENST00000309285 VPS8Q8N3P4 1428 aa13.13□□□□□ -0.31
XCR1-201ENST00000309285 CADPSQ9ULU8 1353 aa13.12□□□□□ -0.31
XCR1-201ENST00000309285 ARID3CA6NKF2 412 aa13.11□□□□□ -0.31
XCR1-201ENST00000309285 SYNJ1O43426 1573 aa13.1□□□□□ -0.31
XCR1-201ENST00000309285 CARMIL1Q5VZK9 1371 aa13.09□□□□□ -0.31
XCR1-201ENST00000309285 FBLN2P98095 1184 aa13.09□□□□□ -0.31
XCR1-201ENST00000309285 BCL11AQ9H165 835 aa13.07□□□□□ -0.32
XCR1-201ENST00000309285 KANK4Q5T7N3 995 aaPredicted RBP13.05□□□□□ -0.32
XCR1-201ENST00000309285 PEG3Q9GZU2 1588 aa13.04□□□□□ -0.32
XCR1-201ENST00000309285 CDK11AQ9UQ88 783 aaPredicted RBP12.99□□□□□ -0.33
XCR1-201ENST00000309285 CFTRP13569 1480 aa12.99□□□□□ -0.33
XCR1-201ENST00000309285 TRIM52Q96A61 297 aa12.98□□□□□ -0.33
XCR1-201ENST00000309285 HMGXB3Q12766 1538 aa12.98□□□□□ -0.33
XCR1-201ENST00000309285 TDRD9Q8NDG6 1382 aaKnown RBP12.96□□□□□ -0.33
XCR1-201ENST00000309285 MTUS2Q5JR59 1369 aa12.96□□□□□ -0.33
XCR1-201ENST00000309285 ANP32EQ9BTT0 268 aa12.96□□□□□ -0.34
XCR1-201ENST00000309285 FANCD2Q9BXW9 1451 aa12.96□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms