Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AP003033.2-201ENST00000528901 805 ntBASIC5.12□□□□□ -1.59
CDX1P47902 AC026956.1-201ENST00000558741 396 ntBASIC5.12□□□□□ -1.59
CDX1P47902 AC079328.3-201ENST00000558905 691 ntTSL 3 BASIC5.12□□□□□ -1.59
CDX1P47902 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC5.12□□□□□ -1.59
CDX1P47902 MIMT1-201ENST00000597105 1050 ntBASIC5.12□□□□□ -1.59
CDX1P47902 AC011500.1-201ENST00000601963 469 ntBASIC5.12□□□□□ -1.59
CDX1P47902 BMS1P7-201ENST00000602440 1052 ntBASIC5.12□□□□□ -1.59
CDX1P47902 AC006363.1-201ENST00000603806 463 ntBASIC5.12□□□□□ -1.59
CDX1P47902 AC011891.2-201ENST00000604949 397 ntBASIC5.12□□□□□ -1.59
CDX1P47902 AC024589.2-201ENST00000605642 1294 ntBASIC5.12□□□□□ -1.59
CDX1P47902 SNORD96A-201ENST00000606577 79 ntBASIC5.12□□□□□ -1.59
CDX1P47902 BANCR-201ENST00000624238 473 ntTSL 2 BASIC5.12□□□□□ -1.59
CDX1P47902 LINC01440-210ENST00000629744 541 ntTSL 5 BASIC5.12□□□□□ -1.59
CDX1P47902 OR8G5-202ENST00000641707 1156 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
CDX1P47902 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC5.12□□□□□ -1.59
CDX1P47902 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC5.12□□□□□ -1.59
CDX1P47902 IKZF2-210ENST00000451136 9344 ntTSL 5 BASIC5.12□□□□□ -1.59
CDX1P47902 MRE11-204ENST00000407439 2684 ntTSL 2 BASIC5.12□□□□□ -1.59
CDX1P47902 AC011815.2-201ENST00000618230 2021 ntBASIC5.12□□□□□ -1.59
CDX1P47902 AC011346.1-201ENST00000638059 1359 ntAPPRIS ALT2 TSL 5 BASIC5.12□□□□□ -1.59
CDX1P47902 CASP5-201ENST00000260315 1414 ntTSL 5 BASIC5.12□□□□□ -1.59
CDX1P47902 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC5.12□□□□□ -1.59
CDX1P47902 RGS6-204ENST00000404301 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC5.12□□□□□ -1.59
CDX1P47902 RGS6-206ENST00000407322 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC5.12□□□□□ -1.59
CDX1P47902 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
CDX1P47902 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
CDX1P47902 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
CDX1P47902 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
CDX1P47902 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC5.11□□□□□ -1.59
CDX1P47902 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
CDX1P47902 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
CDX1P47902 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
CDX1P47902 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC5.11□□□□□ -1.59
CDX1P47902 OR7D4-203ENST00000641669 4965 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
CDX1P47902 C3orf14-201ENST00000232519 690 ntAPPRIS P1 TSL 3 BASIC5.11□□□□□ -1.59
CDX1P47902 OR51J1-201ENST00000332043 951 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
CDX1P47902 PIH1D3-201ENST00000336387 993 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
CDX1P47902 RN7SKP250-201ENST00000363924 321 ntBASIC5.11□□□□□ -1.59
CDX1P47902 RNA5SP485-201ENST00000365053 119 ntBASIC5.11□□□□□ -1.59
CDX1P47902 OR5D16-201ENST00000378396 987 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
CDX1P47902 MIR137-201ENST00000385223 102 ntBASIC5.11□□□□□ -1.59
CDX1P47902 GAPDHP15-201ENST00000398586 975 ntBASIC5.11□□□□□ -1.59
CDX1P47902 OR2A25-201ENST00000408898 1014 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
CDX1P47902 MTND2P12-201ENST00000417560 1252 ntBASIC5.11□□□□□ -1.59
CDX1P47902 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC5.11□□□□□ -1.59
CDX1P47902 AL139184.1-202ENST00000422303 222 ntBASIC5.11□□□□□ -1.59
CDX1P47902 AL158832.1-201ENST00000429661 406 ntTSL 3 BASIC5.11□□□□□ -1.59
CDX1P47902 BX276092.6-201ENST00000430476 250 ntBASIC5.11□□□□□ -1.59
CDX1P47902 FTO-202ENST00000431610 707 ntTSL 3 BASIC5.11□□□□□ -1.59
CDX1P47902 AP006216.1-201ENST00000439104 419 ntTSL 3 BASIC5.11□□□□□ -1.59
CDX1P47902 DAZAP2-204ENST00000439799 701 ntTSL 2 BASIC5.11□□□□□ -1.59
CDX1P47902 SEPT14P12-201ENST00000442280 560 ntBASIC5.11□□□□□ -1.59
CDX1P47902 AL020997.1-201ENST00000446554 349 ntBASIC5.11□□□□□ -1.59
CDX1P47902 AL392046.1-201ENST00000450742 569 ntTSL 5 BASIC5.11□□□□□ -1.59
CDX1P47902 LINC02541-202ENST00000452675 465 ntTSL 5 BASIC5.11□□□□□ -1.59
CDX1P47902 BX276092.8-201ENST00000455722 250 ntBASIC5.11□□□□□ -1.59
CDX1P47902 AC089999.1-201ENST00000460336 374 ntBASIC5.11□□□□□ -1.59
CDX1P47902 RPSAP39-201ENST00000467439 883 ntBASIC5.11□□□□□ -1.59
CDX1P47902 VAMP3-202ENST00000470357 954 ntTSL 3 BASIC5.11□□□□□ -1.59
CDX1P47902 AC093719.1-201ENST00000480427 441 ntBASIC5.11□□□□□ -1.59
CDX1P47902 LINC01322-202ENST00000494915 594 ntTSL 4 BASIC5.11□□□□□ -1.59
CDX1P47902 RN7SL649P-201ENST00000496974 275 ntBASIC5.11□□□□□ -1.59
CDX1P47902 LINC01098-201ENST00000507870 1034 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
CDX1P47902 FABP5P6-201ENST00000510588 409 ntBASIC5.11□□□□□ -1.59
CDX1P47902 AC112242.1-201ENST00000515805 406 ntTSL 3 BASIC5.11□□□□□ -1.59
CDX1P47902 ZFAND1-204ENST00000517588 633 ntTSL 2 BASIC5.11□□□□□ -1.59
CDX1P47902 AP001000.1-201ENST00000526843 742 ntBASIC5.11□□□□□ -1.59
CDX1P47902 TPRXL-210ENST00000532753 478 ntTSL 4 BASIC5.11□□□□□ -1.59
CDX1P47902 AC009387.1-201ENST00000549163 441 ntTSL 3 BASIC5.11□□□□□ -1.59
CDX1P47902 AL161757.3-201ENST00000555316 807 ntTSL 3 BASIC5.11□□□□□ -1.59
CDX1P47902 ASXL1-208ENST00000555343 1034 ntTSL 5 BASIC5.11□□□□□ -1.59
CDX1P47902 RN7SL208P-201ENST00000577964 296 ntBASIC5.11□□□□□ -1.59
CDX1P47902 RN7SL230P-201ENST00000580835 303 ntBASIC5.11□□□□□ -1.59
CDX1P47902 AC006305.2-201ENST00000589617 552 ntTSL 4 BASIC5.11□□□□□ -1.59
CDX1P47902 AC007786.1-202ENST00000590607 443 ntTSL 3 BASIC5.11□□□□□ -1.59
CDX1P47902 SOX9-AS1-216ENST00000602213 821 ntTSL 5 BASIC5.11□□□□□ -1.59
CDX1P47902 AC073333.2-201ENST00000603589 769 ntBASIC5.11□□□□□ -1.59
CDX1P47902 AL022394.1-201ENST00000606979 292 ntBASIC5.11□□□□□ -1.59
CDX1P47902 AC009779.8-202ENST00000607990 932 ntBASIC5.11□□□□□ -1.59
CDX1P47902 LIPF-205ENST00000608620 1290 ntTSL 2 BASIC5.11□□□□□ -1.59
CDX1P47902 SMR3B-204ENST00000614072 783 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
CDX1P47902 MIR6823-201ENST00000622118 61 ntBASIC5.11□□□□□ -1.59
CDX1P47902 HPVC1-201ENST00000629899 1198 ntBASIC5.11□□□□□ -1.59
CDX1P47902 LINC01440-201ENST00000416190 1340 ntTSL 5 BASIC5.11□□□□□ -1.59
CDX1P47902 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
CDX1P47902 ZNF436-201ENST00000314011 4071 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
CDX1P47902 OR14A16-202ENST00000641093 1367 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
CDX1P47902 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
CDX1P47902 CEP44-206ENST00000503780 4534 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
CDX1P47902 MRRFP1-201ENST00000435941 1675 ntBASIC5.11□□□□□ -1.59
CDX1P47902 AMY2A-204ENST00000622339 1862 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
CDX1P47902 USP40-202ENST00000409945 1946 ntTSL 2 BASIC5.11□□□□□ -1.59
CDX1P47902 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC5.11□□□□□ -1.59
CDX1P47902 KIAA0895-201ENST00000297063 4153 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
CDX1P47902 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
CDX1P47902 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
CDX1P47902 ZSCAN26-201ENST00000316606 2362 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
CDX1P47902 NOSTRIN-209ENST00000458381 2535 ntTSL 2 BASIC5.11□□□□□ -1.59
CDX1P47902 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
CDX1P47902 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 129.4 ms