Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 AASDH-203ENST00000502617 3004 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 OR8K1-201ENST00000279783 1087 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 SCGB3A2-201ENST00000296694 515 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 FAM183A-201ENST00000335282 488 ntAPPRIS P1 TSL 2 BASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 RNA5SP510-201ENST00000364697 99 ntBASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 AC117402.1-202ENST00000383686 820 ntTSL 2 BASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 MT-RNR1-201ENST00000389680 954 ntBASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 TRAV25-201ENST00000390454 403 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 YWHAZP6-201ENST00000399764 738 ntBASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 RNU6-564P-201ENST00000410983 104 ntBASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 C9orf147-201ENST00000412934 584 ntTSL 3 BASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 HMGA1P8-201ENST00000414130 321 ntBASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 MTND2P12-201ENST00000417560 1252 ntBASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 KCND3-AS1-201ENST00000419258 383 ntTSL 3 BASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 RPL12P43-201ENST00000420608 499 ntBASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 RPS3P2-201ENST00000421346 701 ntBASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 RPL7AP14-201ENST00000424041 802 ntBASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 MAGI2-AS1-201ENST00000428298 472 ntTSL 3 BASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 AC093151.2-201ENST00000429109 394 ntTSL 3 BASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 AC114812.2-201ENST00000439336 663 ntTSL 2 BASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 CYCSP51-201ENST00000443545 318 ntBASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 AL139275.1-201ENST00000447315 824 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 VN1R38P-201ENST00000450265 887 ntBASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 RPL7AP71-201ENST00000451120 739 ntBASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 SNX18P26-201ENST00000458433 740 ntBASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 NXT1P1-201ENST00000458481 316 ntBASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 TSACC-207ENST00000470342 601 ntTSL 2 BASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 H3F3AP5-201ENST00000475267 429 ntBASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 RPL7AP23-201ENST00000482625 776 ntBASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 AADACP1-204ENST00000483636 1285 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 CR383656.1-201ENST00000484916 377 ntBASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 AC114728.1-201ENST00000488289 483 ntBASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 AC124893.1-201ENST00000496247 545 ntTSL 5 BASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 SCGB3A2-202ENST00000504320 440 ntTSL 3 BASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 AC126768.1-201ENST00000511698 490 ntTSL 3 BASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 LINC02055-205ENST00000521090 774 ntTSL 3 BASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 AC108136.1-201ENST00000530350 631 ntTSL 5 BASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 AC002056.2-201ENST00000532913 284 ntTSL 5 BASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 LINC02446-201ENST00000544591 868 ntTSL 2 BASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 LINC02413-201ENST00000549914 723 ntTSL 5 BASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 AL162632.2-201ENST00000553933 399 ntBASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 CNIH1-205ENST00000556113 523 ntAPPRIS ALT1 TSL 2 BASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 LINC00871-204ENST00000556886 866 ntTSL 3 BASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 AC103876.1-202ENST00000561498 369 ntTSL 3 BASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 AC009019.1-203ENST00000568603 515 ntTSL 5 BASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 AC233702.7-202ENST00000582941 211 ntBASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 AC005546.1-201ENST00000591837 391 ntTSL 3 BASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 AC020915.5-201ENST00000596836 964 ntBASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 UBA52-209ENST00000597451 514 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 AL023583.1-201ENST00000607518 1143 ntBASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 AL021707.7-201ENST00000607991 416 ntBASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 MALAT1-209ENST00000616691 587 ntTSL 2 BASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 LINC01440-210ENST00000629744 541 ntTSL 5 BASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 LINC01837-206ENST00000636649 1056 ntTSL 5 BASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 AC123769.1-201ENST00000530992 3192 ntBASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 LINC02047-201ENST00000494761 1371 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 EEF1A1P9-201ENST00000514975 1383 ntBASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 AC243772.3-201ENST00000617878 1537 ntTSL 5 BASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 CHD6-202ENST00000373222 2477 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 OR2A12-202ENST00000641592 4163 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
PDLIM3Q53GG5 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC5.27□□□□□ -1.57
PDLIM3Q53GG5 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
PDLIM3Q53GG5 DPY19L1P1-201ENST00000417811 2594 ntBASIC5.27□□□□□ -1.57
PDLIM3Q53GG5 CADM2-202ENST00000405615 1314 ntAPPRIS P3 TSL 1 (best) BASIC5.27□□□□□ -1.57
PDLIM3Q53GG5 USP16-201ENST00000334352 3004 ntAPPRIS P3 TSL 5 BASIC5.27□□□□□ -1.57
PDLIM3Q53GG5 ACPP-202ENST00000351273 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
PDLIM3Q53GG5 RAP1GDS1-204ENST00000408900 1942 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
PDLIM3Q53GG5 AC004852.2-201ENST00000614289 2218 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
PDLIM3Q53GG5 CYP4A22-206ENST00000619754 2351 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
PDLIM3Q53GG5 AL137141.1-201ENST00000624622 4836 ntBASIC5.27□□□□□ -1.57
PDLIM3Q53GG5 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC5.27□□□□□ -1.57
PDLIM3Q53GG5 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
PDLIM3Q53GG5 RPL6-201ENST00000202773 947 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
PDLIM3Q53GG5 CCL2-201ENST00000225831 741 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
PDLIM3Q53GG5 AC023490.2-201ENST00000359859 470 ntBASIC5.27□□□□□ -1.57
PDLIM3Q53GG5 RNU6-819P-201ENST00000364116 107 ntBASIC5.27□□□□□ -1.57
PDLIM3Q53GG5 OR14A2-201ENST00000366485 945 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
PDLIM3Q53GG5 AC004386.1-201ENST00000393214 761 ntBASIC5.27□□□□□ -1.57
PDLIM3Q53GG5 AL607077.1-201ENST00000401718 499 ntBASIC5.27□□□□□ -1.57
PDLIM3Q53GG5 FIGN-202ENST00000409634 746 ntTSL 5 BASIC5.27□□□□□ -1.57
PDLIM3Q53GG5 TMA16P2-201ENST00000413187 601 ntBASIC5.27□□□□□ -1.57
PDLIM3Q53GG5 AL353651.1-201ENST00000415629 355 ntTSL 5 BASIC5.27□□□□□ -1.57
PDLIM3Q53GG5 AL359092.1-201ENST00000417156 265 ntBASIC5.27□□□□□ -1.57
PDLIM3Q53GG5 AL354956.1-201ENST00000424487 467 ntTSL 5 BASIC5.27□□□□□ -1.57
PDLIM3Q53GG5 AL121759.1-202ENST00000425746 387 ntTSL 3 BASIC5.27□□□□□ -1.57
PDLIM3Q53GG5 AC245884.2-201ENST00000426257 404 ntBASIC5.27□□□□□ -1.57
PDLIM3Q53GG5 AC096677.2-201ENST00000430471 598 ntTSL 5 BASIC5.27□□□□□ -1.57
PDLIM3Q53GG5 AL590128.1-201ENST00000433407 286 ntBASIC5.27□□□□□ -1.57
PDLIM3Q53GG5 AL645939.3-201ENST00000435408 225 ntBASIC5.27□□□□□ -1.57
PDLIM3Q53GG5 AL109807.1-201ENST00000438222 569 ntTSL 3 BASIC5.27□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 94.7 ms