Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 RBM22P1-201ENST00000578589 1214 ntBASIC6.17□□□□□ -1.42
COL4A4P53420 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC6.17□□□□□ -1.42
COL4A4P53420 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC6.17□□□□□ -1.42
COL4A4P53420 AC145423.1-201ENST00000605712 336 ntBASIC6.17□□□□□ -1.42
COL4A4P53420 MIR6837-201ENST00000620884 64 ntBASIC6.17□□□□□ -1.42
COL4A4P53420 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC6.17□□□□□ -1.42
COL4A4P53420 PZP-201ENST00000261336 4610 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL4A4P53420 JAKMIP2-201ENST00000265272 6001 ntAPPRIS P3 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL4A4P53420 SYNPO2-202ENST00000429713 9920 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
COL4A4P53420 TESPA1-212ENST00000532804 2000 ntAPPRIS ALT2 TSL 5 BASIC6.16□□□□□ -1.42
COL4A4P53420 CTNND1-222ENST00000529919 4780 ntTSL 5 BASIC6.16□□□□□ -1.42
COL4A4P53420 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
COL4A4P53420 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL4A4P53420 DST-207ENST00000421834 18030 ntAPPRIS ALT2 TSL 5 BASIC6.16□□□□□ -1.42
COL4A4P53420 HELB-201ENST00000247815 12866 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL4A4P53420 FREM1-204ENST00000422223 10086 ntAPPRIS P1 TSL 5 BASIC6.16□□□□□ -1.42
COL4A4P53420 AC079753.1-201ENST00000623243 3868 ntBASIC6.16□□□□□ -1.42
COL4A4P53420 TACC1-207ENST00000519416 5510 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
COL4A4P53420 TACC1-210ENST00000520615 5509 ntTSL 2 BASIC6.16□□□□□ -1.42
COL4A4P53420 CHD2-201ENST00000394196 9363 ntAPPRIS P1 TSL 5 BASIC6.16□□□□□ -1.42
COL4A4P53420 SLC15A2-205ENST00000489711 5673 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL4A4P53420 CUZD1-205ENST00000368904 2903 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL4A4P53420 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC6.16□□□□□ -1.42
COL4A4P53420 RNA5SP30-201ENST00000365552 115 ntBASIC6.16□□□□□ -1.42
COL4A4P53420 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
COL4A4P53420 SNORA70.9-201ENST00000384370 135 ntBASIC6.16□□□□□ -1.42
COL4A4P53420 HIST1H3PS1-201ENST00000404612 417 ntBASIC6.16□□□□□ -1.42
COL4A4P53420 AL357752.1-201ENST00000412817 349 ntBASIC6.16□□□□□ -1.42
COL4A4P53420 RPS6P23-201ENST00000413224 722 ntBASIC6.16□□□□□ -1.42
COL4A4P53420 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC6.16□□□□□ -1.42
COL4A4P53420 AC244035.2-201ENST00000425896 630 ntTSL 3 BASIC6.16□□□□□ -1.42
COL4A4P53420 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC6.16□□□□□ -1.42
COL4A4P53420 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
COL4A4P53420 AC004453.1-201ENST00000487895 408 ntBASIC6.16□□□□□ -1.42
COL4A4P53420 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC6.16□□□□□ -1.42
COL4A4P53420 AC018557.2-201ENST00000565082 536 ntTSL 5 BASIC6.16□□□□□ -1.42
COL4A4P53420 LINC00698-203ENST00000468072 1957 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
COL4A4P53420 AC137056.2-201ENST00000624055 1958 ntBASIC6.16□□□□□ -1.42
COL4A4P53420 POLQ-201ENST00000264233 8775 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL4A4P53420 EP400-204ENST00000389561 12317 ntAPPRIS P1 TSL 5 BASIC6.16□□□□□ -1.42
COL4A4P53420 SGMS2-203ENST00000394686 2127 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL4A4P53420 CFAP221-203ENST00000413369 2801 ntAPPRIS P1 TSL 5 BASIC6.16□□□□□ -1.42
COL4A4P53420 EPHA3-201ENST00000336596 5809 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL4A4P53420 ETF1-203ENST00000503014 1736 ntTSL 2 BASIC6.16□□□□□ -1.42
COL4A4P53420 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
COL4A4P53420 ZNF585A-202ENST00000356958 6822 ntTSL 2 BASIC6.15□□□□□ -1.42
COL4A4P53420 RBMXL1-201ENST00000321792 4799 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
COL4A4P53420 EPPK1-202ENST00000615648 16002 ntAPPRIS P2 TSL 5 BASIC6.15□□□□□ -1.42
COL4A4P53420 MID1-201ENST00000317552 6463 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
COL4A4P53420 NRCAM-203ENST00000379024 5782 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
COL4A4P53420 RUNX1T1-249ENST00000613886 7401 ntAPPRIS ALT1 TSL 5 BASIC6.15□□□□□ -1.42
COL4A4P53420 C17orf78-203ENST00000611038 1675 ntAPPRIS ALT2 TSL 2 BASIC6.15□□□□□ -1.42
COL4A4P53420 PDZD2-202ENST00000438447 11704 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
COL4A4P53420 PPP1R1C-201ENST00000280295 1636 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
COL4A4P53420 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC6.15□□□□□ -1.42
COL4A4P53420 ADGRF5-202ENST00000283296 5810 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
COL4A4P53420 ERG-205ENST00000398910 4954 ntTSL 5 BASIC6.15□□□□□ -1.42
COL4A4P53420 RN7SKP213-201ENST00000410746 298 ntBASIC6.15□□□□□ -1.42
COL4A4P53420 AC096669.1-202ENST00000413708 616 ntTSL 2 BASIC6.15□□□□□ -1.42
COL4A4P53420 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC6.15□□□□□ -1.42
COL4A4P53420 RPS17P17-201ENST00000419392 409 ntBASIC6.15□□□□□ -1.42
COL4A4P53420 AL450996.1-201ENST00000445574 1202 ntBASIC6.15□□□□□ -1.42
COL4A4P53420 RPS23P9-201ENST00000448848 438 ntBASIC6.15□□□□□ -1.42
COL4A4P53420 AC087672.1-201ENST00000479876 766 ntBASIC6.15□□□□□ -1.42
COL4A4P53420 LINC02006-201ENST00000488210 524 ntTSL 4 BASIC6.15□□□□□ -1.42
COL4A4P53420 RN7SL591P-201ENST00000496150 292 ntBASIC6.15□□□□□ -1.42
COL4A4P53420 CCDC11P1-201ENST00000503137 1162 ntBASIC6.15□□□□□ -1.42
COL4A4P53420 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC6.15□□□□□ -1.42
COL4A4P53420 NOP10-202ENST00000557912 436 ntTSL 2 BASIC6.15□□□□□ -1.42
COL4A4P53420 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC6.15□□□□□ -1.42
COL4A4P53420 AC091953.3-201ENST00000623220 236 ntBASIC6.15□□□□□ -1.42
COL4A4P53420 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
COL4A4P53420 LIPG-201ENST00000261292 10441 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
COL4A4P53420 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
COL4A4P53420 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC6.15□□□□□ -1.43
COL4A4P53420 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
COL4A4P53420 AC007938.2-201ENST00000604666 2634 ntBASIC6.15□□□□□ -1.43
COL4A4P53420 VANGL1-204ENST00000369510 8647 ntAPPRIS ALT1 TSL 1 (best) BASIC6.15□□□□□ -1.43
COL4A4P53420 KIDINS220-206ENST00000473731 7248 ntTSL 5 BASIC6.15□□□□□ -1.43
COL4A4P53420 LIN7A-204ENST00000552864 6112 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
COL4A4P53420 POGK-201ENST00000367875 6254 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.43
COL4A4P53420 SUPT7L-202ENST00000404798 4114 ntTSL 2 BASIC6.15□□□□□ -1.43
COL4A4P53420 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
COL4A4P53420 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC6.15□□□□□ -1.43
COL4A4P53420 ZNF24-204ENST00000589881 7419 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
COL4A4P53420 CEP44-206ENST00000503780 4534 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL4A4P53420 AC112255.1-201ENST00000624070 2493 ntBASIC6.14□□□□□ -1.43
COL4A4P53420 TMPRSS15-201ENST00000284885 3947 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL4A4P53420 NAV2-216ENST00000540292 11003 ntAPPRIS ALT1 TSL 5 BASIC6.14□□□□□ -1.43
COL4A4P53420 OGT-201ENST00000373701 3310 ntAPPRIS ALT1 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL4A4P53420 NUP107-201ENST00000229179 6457 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL4A4P53420 CCP110-202ENST00000396208 5151 ntAPPRIS P3 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL4A4P53420 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
COL4A4P53420 AL159987.1-201ENST00000347911 293 ntBASIC6.14□□□□□ -1.43
COL4A4P53420 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC6.14□□□□□ -1.43
COL4A4P53420 RN7SKP28-201ENST00000364770 305 ntBASIC6.14□□□□□ -1.43
COL4A4P53420 STMN1-202ENST00000374291 867 ntAPPRIS P1 TSL 2 BASIC6.14□□□□□ -1.43
COL4A4P53420 MIR141-201ENST00000384975 95 ntBASIC6.14□□□□□ -1.43
COL4A4P53420 RN7SKP279-201ENST00000411383 298 ntBASIC6.14□□□□□ -1.43
COL4A4P53420 AC107057.1-201ENST00000425763 319 ntTSL 3 BASIC6.14□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 143.3 ms