Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 CLDN10-201ENST00000299339 949 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
HMGB1P09429 OR56A3-201ENST00000329564 948 ntAPPRIS P1 BASIC7.64□□□□□ -1.19
HMGB1P09429 BCL2A1-202ENST00000335661 809 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
HMGB1P09429 RNU6-304P-201ENST00000364855 107 ntBASIC7.64□□□□□ -1.19
HMGB1P09429 TRAJ46-201ENST00000390491 63 ntAPPRIS P1 BASIC7.64□□□□□ -1.19
HMGB1P09429 MRPS33-202ENST00000393008 853 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
HMGB1P09429 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
HMGB1P09429 UBE2V1P15-201ENST00000407776 448 ntBASIC7.64□□□□□ -1.19
HMGB1P09429 NPM1P40-201ENST00000412758 733 ntBASIC7.64□□□□□ -1.19
HMGB1P09429 AC233728.1-201ENST00000418049 218 ntTSL 5 BASIC7.64□□□□□ -1.19
HMGB1P09429 E2F3-IT1-201ENST00000433182 400 ntTSL 3 BASIC7.64□□□□□ -1.19
HMGB1P09429 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC7.64□□□□□ -1.19
HMGB1P09429 AL355355.1-201ENST00000442900 793 ntBASIC7.64□□□□□ -1.19
HMGB1P09429 LINC01307-202ENST00000444327 771 ntTSL 2 BASIC7.64□□□□□ -1.19
HMGB1P09429 C2orf80-206ENST00000451346 979 ntTSL 5 BASIC7.64□□□□□ -1.19
HMGB1P09429 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC7.64□□□□□ -1.19
HMGB1P09429 AP003385.3-201ENST00000472498 287 ntBASIC7.64□□□□□ -1.19
HMGB1P09429 RAB7A-205ENST00000485280 507 ntTSL 3 BASIC7.64□□□□□ -1.19
HMGB1P09429 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC7.64□□□□□ -1.19
HMGB1P09429 RPS27AP16-201ENST00000492222 470 ntBASIC7.64□□□□□ -1.19
HMGB1P09429 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
HMGB1P09429 RNU6-347P-201ENST00000516658 105 ntBASIC7.64□□□□□ -1.19
HMGB1P09429 HAUS1P3-201ENST00000523909 662 ntBASIC7.64□□□□□ -1.19
HMGB1P09429 AC026462.4-201ENST00000565229 951 ntTSL 3 BASIC7.64□□□□□ -1.19
HMGB1P09429 AC090616.1-201ENST00000583895 447 ntBASIC7.64□□□□□ -1.19
HMGB1P09429 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC7.64□□□□□ -1.19
HMGB1P09429 CHMP1B-AS1-201ENST00000586474 553 ntTSL 4 BASIC7.64□□□□□ -1.19
HMGB1P09429 APOC2-203ENST00000590360 744 ntAPPRIS P1 TSL 3 BASIC7.64□□□□□ -1.19
HMGB1P09429 AC073137.1-201ENST00000605636 634 ntBASIC7.64□□□□□ -1.19
HMGB1P09429 AC097467.3-215ENST00000609486 793 ntTSL 5 BASIC7.64□□□□□ -1.19
HMGB1P09429 AC097467.3-214ENST00000610249 843 ntTSL 5 BASIC7.64□□□□□ -1.19
HMGB1P09429 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC7.64□□□□□ -1.19
HMGB1P09429 PRL-202ENST00000615510 1268 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
HMGB1P09429 SETX-201ENST00000224140 11100 ntAPPRIS P2 TSL 1 (best) BASIC7.64□□□□□ -1.19
HMGB1P09429 AC007744.1-201ENST00000607540 2289 ntTSL 5 BASIC7.64□□□□□ -1.19
HMGB1P09429 EPS15-203ENST00000371733 5225 ntAPPRIS P2 TSL 1 (best) BASIC7.64□□□□□ -1.19
HMGB1P09429 TRAF5-201ENST00000261464 3972 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
HMGB1P09429 THRB-203ENST00000396671 7506 ntAPPRIS P2 TSL 5 BASIC7.64□□□□□ -1.19
HMGB1P09429 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
HMGB1P09429 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
HMGB1P09429 AP000756.2-201ENST00000624168 2567 ntBASIC7.64□□□□□ -1.19
HMGB1P09429 CCT8P1-201ENST00000413611 1657 ntBASIC7.63□□□□□ -1.19
HMGB1P09429 IPO8-209ENST00000544829 3212 ntTSL 2 BASIC7.63□□□□□ -1.19
HMGB1P09429 LMO3-235ENST00000616247 3227 ntTSL 5 BASIC7.63□□□□□ -1.19
HMGB1P09429 FAM197Y8-201ENST00000426661 2340 ntTSL 2 BASIC7.63□□□□□ -1.19
HMGB1P09429 ABCB5-203ENST00000406935 1483 ntTSL 2 BASIC7.63□□□□□ -1.19
HMGB1P09429 AC067942.1-201ENST00000488045 1493 ntBASIC7.63□□□□□ -1.19
HMGB1P09429 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC7.63□□□□□ -1.19
HMGB1P09429 ZNF578-201ENST00000421239 2017 ntAPPRIS P1 TSL 2 BASIC7.63□□□□□ -1.19
HMGB1P09429 MRE11-204ENST00000407439 2684 ntTSL 2 BASIC7.63□□□□□ -1.19
HMGB1P09429 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
HMGB1P09429 OCM2-201ENST00000257627 696 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
HMGB1P09429 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC7.63□□□□□ -1.19
HMGB1P09429 AL451142.1-201ENST00000375867 775 ntBASIC7.63□□□□□ -1.19
HMGB1P09429 MIR1266-201ENST00000408125 84 ntBASIC7.63□□□□□ -1.19
HMGB1P09429 AL929472.2-201ENST00000419993 481 ntTSL 5 BASIC7.63□□□□□ -1.19
HMGB1P09429 AL050344.1-201ENST00000424084 490 ntTSL 3 BASIC7.63□□□□□ -1.19
HMGB1P09429 AL606534.4-201ENST00000427176 792 ntTSL 5 BASIC7.63□□□□□ -1.19
HMGB1P09429 AC083862.1-201ENST00000427378 1242 ntBASIC7.63□□□□□ -1.19
HMGB1P09429 AL161793.1-201ENST00000435021 445 ntTSL 3 BASIC7.63□□□□□ -1.19
HMGB1P09429 AC007000.2-201ENST00000442564 487 ntBASIC7.63□□□□□ -1.19
HMGB1P09429 AC020559.1-201ENST00000444229 583 ntTSL 2 BASIC7.63□□□□□ -1.19
HMGB1P09429 CRYZL1-217ENST00000445393 824 ntTSL 5 BASIC7.63□□□□□ -1.19
HMGB1P09429 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
HMGB1P09429 HMGB1P26-201ENST00000452520 628 ntBASIC7.63□□□□□ -1.19
HMGB1P09429 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC7.63□□□□□ -1.19
HMGB1P09429 FGB-207ENST00000509493 1164 ntTSL 5 BASIC7.63□□□□□ -1.19
HMGB1P09429 AL671862.1-201ENST00000515851 349 ntBASIC7.63□□□□□ -1.19
HMGB1P09429 RNA5SP96-201ENST00000516041 107 ntBASIC7.63□□□□□ -1.19
HMGB1P09429 AC008708.1-201ENST00000517346 474 ntTSL 3 BASIC7.63□□□□□ -1.19
HMGB1P09429 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC7.63□□□□□ -1.19
HMGB1P09429 AC131935.1-201ENST00000524621 333 ntBASIC7.63□□□□□ -1.19
HMGB1P09429 AP005639.1-201ENST00000526939 192 ntBASIC7.63□□□□□ -1.19
HMGB1P09429 TNFRSF17-201ENST00000053243 994 ntAPPRIS P2 TSL 1 (best) BASIC7.63□□□□□ -1.19
HMGB1P09429 AC103740.1-202ENST00000558404 542 ntTSL 4 BASIC7.63□□□□□ -1.19
HMGB1P09429 AC023968.1-201ENST00000560719 475 ntBASIC7.63□□□□□ -1.19
HMGB1P09429 AC090283.1-201ENST00000582101 265 ntTSL 3 BASIC7.63□□□□□ -1.19
HMGB1P09429 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC7.63□□□□□ -1.19
HMGB1P09429 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC7.63□□□□□ -1.19
HMGB1P09429 AC036176.3-201ENST00000602456 418 ntBASIC7.63□□□□□ -1.19
HMGB1P09429 SMR3B-204ENST00000614072 783 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
HMGB1P09429 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC7.63□□□□□ -1.19
HMGB1P09429 COMMD2-203ENST00000473414 3706 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
HMGB1P09429 DMD-211ENST00000378707 7410 ntTSL 5 BASIC7.63□□□□□ -1.19
HMGB1P09429 LINC01931-201ENST00000295052 1832 ntTSL 2 BASIC7.63□□□□□ -1.19
HMGB1P09429 ERG-202ENST00000398897 4651 ntTSL 5 BASIC7.63□□□□□ -1.19
HMGB1P09429 CSDE1-203ENST00000358528 4076 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
HMGB1P09429 PUM1-206ENST00000426105 4043 ntAPPRIS ALT1 TSL 1 (best) BASIC7.63□□□□□ -1.19
HMGB1P09429 RYR2-201ENST00000360064 14850 ntAPPRIS ALT2 TSL 5 BASIC7.63□□□□□ -1.19
HMGB1P09429 GPR89A-213ENST00000534502 1644 ntTSL 2 BASIC7.63□□□□□ -1.19
HMGB1P09429 GRIK1-201ENST00000327783 3179 ntTSL 5 BASIC7.63□□□□□ -1.19
HMGB1P09429 DNM1L-201ENST00000266481 3101 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
HMGB1P09429 OR52N1-202ENST00000641645 2545 ntAPPRIS P1 BASIC7.62□□□□□ -1.19
HMGB1P09429 C2orf16-201ENST00000408964 6200 ntAPPRIS P2 BASIC7.62□□□□□ -1.19
HMGB1P09429 AC125238.2-201ENST00000430003 1440 ntBASIC7.62□□□□□ -1.19
HMGB1P09429 OR51I2-202ENST00000641930 3302 ntAPPRIS P1 BASIC7.62□□□□□ -1.19
HMGB1P09429 PTPRR-204ENST00000440835 2818 ntAPPRIS ALT2 TSL 1 (best) BASIC7.62□□□□□ -1.19
HMGB1P09429 WDR35-201ENST00000281405 6918 ntAPPRIS P3 TSL 1 (best) BASIC7.62□□□□□ -1.19
HMGB1P09429 TEX11-202ENST00000374320 2224 ntTSL 2 BASIC7.62□□□□□ -1.19
HMGB1P09429 RBPJ-202ENST00000342320 5761 ntAPPRIS P3 TSL 1 (best) BASIC7.62□□□□□ -1.19
Retrieved 100 of 98,524 protein–RNA pairs in 79.6 ms