Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 SOAT1-201ENST00000367619 6835 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
SHROOM4Q9ULL8 SCAPER-203ENST00000538941 4853 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
SHROOM4Q9ULL8 GAPVD1-202ENST00000297933 6003 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
SHROOM4Q9ULL8 PTPN14-201ENST00000366956 12985 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
SHROOM4Q9ULL8 NAV2-202ENST00000360655 10667 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
SHROOM4Q9ULL8 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
SHROOM4Q9ULL8 TAF7L-203ENST00000372907 2341 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
SHROOM4Q9ULL8 CLEC4E-201ENST00000299663 2159 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
SHROOM4Q9ULL8 PRNCR1-201ENST00000635449 12727 ntBASIC11.24□□□□□ -0.61
SHROOM4Q9ULL8 MRRFP1-201ENST00000435941 1675 ntBASIC11.24□□□□□ -0.61
SHROOM4Q9ULL8 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC11.24□□□□□ -0.61
SHROOM4Q9ULL8 CBX1P2-201ENST00000453841 458 ntBASIC11.24□□□□□ -0.61
SHROOM4Q9ULL8 AC104164.1-201ENST00000460282 590 ntBASIC11.24□□□□□ -0.61
SHROOM4Q9ULL8 RN7SL547P-201ENST00000490793 290 ntBASIC11.24□□□□□ -0.61
SHROOM4Q9ULL8 TCEANC-205ENST00000544987 1146 ntTSL 5 BASIC11.24□□□□□ -0.61
SHROOM4Q9ULL8 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC11.24□□□□□ -0.61
SHROOM4Q9ULL8 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC11.24□□□□□ -0.61
SHROOM4Q9ULL8 MTURN-202ENST00000324489 5605 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
SHROOM4Q9ULL8 PARP4P2-201ENST00000446672 3326 ntBASIC11.24□□□□□ -0.61
SHROOM4Q9ULL8 AC004852.2-201ENST00000614289 2218 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
SHROOM4Q9ULL8 AL050403.1-201ENST00000448859 2006 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
SHROOM4Q9ULL8 OR5AN1-202ENST00000641850 8468 ntAPPRIS P1 BASIC11.23□□□□□ -0.61
SHROOM4Q9ULL8 PLCB4-202ENST00000378473 5619 ntAPPRIS ALT1 TSL 1 (best) BASIC11.23□□□□□ -0.61
SHROOM4Q9ULL8 DPY19L2P2-203ENST00000435536 1858 ntBASIC11.23□□□□□ -0.61
SHROOM4Q9ULL8 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
SHROOM4Q9ULL8 SATB1-209ENST00000454909 3755 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
SHROOM4Q9ULL8 AL121768.1-201ENST00000613917 2544 ntBASIC11.23□□□□□ -0.61
SHROOM4Q9ULL8 SUCLG1-201ENST00000393868 1475 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
SHROOM4Q9ULL8 ARHGEF6-201ENST00000250617 6019 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
SHROOM4Q9ULL8 CR1-201ENST00000367049 7470 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
SHROOM4Q9ULL8 FLJ12825-201ENST00000515617 3942 ntTSL 2 BASIC11.23□□□□□ -0.61
SHROOM4Q9ULL8 MIR3681HG-201ENST00000412294 2183 ntTSL 2 BASIC11.23□□□□□ -0.61
SHROOM4Q9ULL8 MRPL53P1-201ENST00000414323 319 ntBASIC11.23□□□□□ -0.61
SHROOM4Q9ULL8 AL445928.1-201ENST00000435545 222 ntBASIC11.23□□□□□ -0.61
SHROOM4Q9ULL8 AC022387.1-201ENST00000444770 794 ntTSL 3 BASIC11.23□□□□□ -0.61
SHROOM4Q9ULL8 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC11.23□□□□□ -0.61
SHROOM4Q9ULL8 AL157777.1-201ENST00000468100 304 ntBASIC11.23□□□□□ -0.61
SHROOM4Q9ULL8 AC022215.1-201ENST00000481770 362 ntBASIC11.23□□□□□ -0.61
SHROOM4Q9ULL8 OR56A7P-201ENST00000524865 941 ntBASIC11.23□□□□□ -0.61
SHROOM4Q9ULL8 LINC00871-204ENST00000556886 866 ntTSL 3 BASIC11.23□□□□□ -0.61
SHROOM4Q9ULL8 FKBP1AP1-201ENST00000594588 318 ntBASIC11.23□□□□□ -0.61
SHROOM4Q9ULL8 AC011497.2-201ENST00000600255 639 ntBASIC11.23□□□□□ -0.61
SHROOM4Q9ULL8 AC024589.2-201ENST00000605642 1294 ntBASIC11.23□□□□□ -0.61
SHROOM4Q9ULL8 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
SHROOM4Q9ULL8 AC009234.1-201ENST00000634985 895 ntTSL 5 BASIC11.23□□□□□ -0.61
SHROOM4Q9ULL8 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC11.23□□□□□ -0.61
SHROOM4Q9ULL8 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
SHROOM4Q9ULL8 APOOL-202ENST00000613473 6445 ntAPPRIS ALT1 TSL 5 BASIC11.23□□□□□ -0.61
SHROOM4Q9ULL8 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
SHROOM4Q9ULL8 ZC3H7A-214ENST00000575984 2632 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
SHROOM4Q9ULL8 HMG20A-201ENST00000336216 4046 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
SHROOM4Q9ULL8 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC11.23□□□□□ -0.61
SHROOM4Q9ULL8 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
SHROOM4Q9ULL8 ITPR1-204ENST00000443694 9513 ntAPPRIS ALT1 TSL 1 (best) BASIC11.22□□□□□ -0.61
SHROOM4Q9ULL8 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
SHROOM4Q9ULL8 CEP44-206ENST00000503780 4534 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
SHROOM4Q9ULL8 LINC02035-201ENST00000610128 5476 ntBASIC11.22□□□□□ -0.61
SHROOM4Q9ULL8 NAT1-208ENST00000520546 1446 ntAPPRIS P1 BASIC11.22□□□□□ -0.61
SHROOM4Q9ULL8 GRIA2-204ENST00000393815 5260 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
SHROOM4Q9ULL8 LCP2-201ENST00000046794 4678 ntAPPRIS P2 TSL 1 (best) BASIC11.22□□□□□ -0.61
SHROOM4Q9ULL8 UPF2-203ENST00000397053 5369 ntAPPRIS P1 TSL 5 BASIC11.22□□□□□ -0.61
SHROOM4Q9ULL8 RNA5SP350-201ENST00000363298 111 ntBASIC11.22□□□□□ -0.61
SHROOM4Q9ULL8 RN7SKP166-201ENST00000410812 305 ntBASIC11.22□□□□□ -0.61
SHROOM4Q9ULL8 HMGA1P8-201ENST00000414130 321 ntBASIC11.22□□□□□ -0.61
SHROOM4Q9ULL8 SDC4P-201ENST00000453285 601 ntBASIC11.22□□□□□ -0.61
SHROOM4Q9ULL8 AC006296.2-201ENST00000507932 764 ntTSL 3 BASIC11.22□□□□□ -0.61
SHROOM4Q9ULL8 CT45A1-202ENST00000594565 1007 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
SHROOM4Q9ULL8 AL139041.1-201ENST00000605480 610 ntBASIC11.22□□□□□ -0.61
SHROOM4Q9ULL8 LINC02340-201ENST00000610335 626 ntTSL 3 BASIC11.22□□□□□ -0.61
SHROOM4Q9ULL8 IPCEF1-201ENST00000265198 6689 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
SHROOM4Q9ULL8 AC008957.3-201ENST00000624112 2242 ntBASIC11.22□□□□□ -0.61
SHROOM4Q9ULL8 ERG-202ENST00000398897 4651 ntTSL 5 BASIC11.22□□□□□ -0.61
SHROOM4Q9ULL8 RIMS1-219ENST00000523963 3097 ntTSL 2 BASIC11.22□□□□□ -0.61
SHROOM4Q9ULL8 MAPK10-297ENST00000641287 3725 ntAPPRIS P2 BASIC11.22□□□□□ -0.61
SHROOM4Q9ULL8 TLK2-214ENST00000582809 3608 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
SHROOM4Q9ULL8 AL391261.1-201ENST00000555712 1479 ntBASIC11.22□□□□□ -0.61
SHROOM4Q9ULL8 AL359091.1-201ENST00000449048 1734 ntBASIC11.21□□□□□ -0.61
SHROOM4Q9ULL8 CCDC171-201ENST00000380701 6512 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
SHROOM4Q9ULL8 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.61
SHROOM4Q9ULL8 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC11.21□□□□□ -0.61
SHROOM4Q9ULL8 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC11.21□□□□□ -0.61
SHROOM4Q9ULL8 AC126120.1-201ENST00000431082 470 ntBASIC11.21□□□□□ -0.61
SHROOM4Q9ULL8 RPL21P133-201ENST00000443666 476 ntBASIC11.21□□□□□ -0.61
SHROOM4Q9ULL8 EIF1P7-201ENST00000487533 337 ntBASIC11.21□□□□□ -0.61
SHROOM4Q9ULL8 RN7SL57P-201ENST00000493687 290 ntBASIC11.21□□□□□ -0.61
SHROOM4Q9ULL8 OR7E158P-201ENST00000524483 910 ntBASIC11.21□□□□□ -0.61
SHROOM4Q9ULL8 AC074050.3-201ENST00000569175 441 ntTSL 4 BASIC11.21□□□□□ -0.61
SHROOM4Q9ULL8 TXNP4-201ENST00000575018 310 ntBASIC11.21□□□□□ -0.61
SHROOM4Q9ULL8 AL445222.1-201ENST00000607259 628 ntBASIC11.21□□□□□ -0.61
SHROOM4Q9ULL8 TCL6_3.1-201ENST00000619064 137 ntBASIC11.21□□□□□ -0.61
SHROOM4Q9ULL8 ATM-229ENST00000639953 587 ntTSL 5 BASIC11.21□□□□□ -0.61
SHROOM4Q9ULL8 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
SHROOM4Q9ULL8 LINC01684-203ENST00000453784 2908 ntTSL 2 BASIC11.21□□□□□ -0.61
SHROOM4Q9ULL8 NFIA-201ENST00000357977 3200 ntTSL 2 BASIC11.21□□□□□ -0.62
SHROOM4Q9ULL8 OR9K1P-202ENST00000641111 3217 ntBASIC11.21□□□□□ -0.62
SHROOM4Q9ULL8 BANK1-206ENST00000504592 3544 ntTSL 2 BASIC11.21□□□□□ -0.62
SHROOM4Q9ULL8 FSTL5-202ENST00000379164 4757 ntAPPRIS ALT1 TSL 1 (best) BASIC11.21□□□□□ -0.62
SHROOM4Q9ULL8 RFX4-203ENST00000392842 3955 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
SHROOM4Q9ULL8 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC11.21□□□□□ -0.62
SHROOM4Q9ULL8 CFAP57-208ENST00000610710 4162 ntTSL 5 BASIC11.21□□□□□ -0.62
Retrieved 100 of 98,524 protein–RNA pairs in 139.8 ms