Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 MME-217ENST00000616757 1315 ntTSL 5 BASIC22.07■■□□□ 1.12
COL4A3BPQ9Y5P4 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC22.07■■□□□ 1.12
COL4A3BPQ9Y5P4 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC22.07■■□□□ 1.12
COL4A3BPQ9Y5P4 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
COL4A3BPQ9Y5P4 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC22.07■■□□□ 1.12
COL4A3BPQ9Y5P4 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
COL4A3BPQ9Y5P4 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC22.07■■□□□ 1.12
COL4A3BPQ9Y5P4 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC22.07■■□□□ 1.12
COL4A3BPQ9Y5P4 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC22.07■■□□□ 1.12
COL4A3BPQ9Y5P4 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC22.07■■□□□ 1.12
COL4A3BPQ9Y5P4 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC22.07■■□□□ 1.12
COL4A3BPQ9Y5P4 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC22.07■■□□□ 1.12
COL4A3BPQ9Y5P4 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC22.07■■□□□ 1.12
COL4A3BPQ9Y5P4 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC22.07■■□□□ 1.12
COL4A3BPQ9Y5P4 SPIB-206ENST00000596074 847 ntTSL 2 BASIC22.07■■□□□ 1.12
COL4A3BPQ9Y5P4 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC22.07■■□□□ 1.12
COL4A3BPQ9Y5P4 AC124016.1-201ENST00000609552 612 ntBASIC22.07■■□□□ 1.12
COL4A3BPQ9Y5P4 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC22.07■■□□□ 1.12
COL4A3BPQ9Y5P4 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
COL4A3BPQ9Y5P4 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC22.07■■□□□ 1.12
COL4A3BPQ9Y5P4 BID-204ENST00000399767 2129 ntTSL 2 BASIC22.07■■□□□ 1.12
COL4A3BPQ9Y5P4 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
COL4A3BPQ9Y5P4 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
COL4A3BPQ9Y5P4 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC22.07■■□□□ 1.12
COL4A3BPQ9Y5P4 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
COL4A3BPQ9Y5P4 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
COL4A3BPQ9Y5P4 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
COL4A3BPQ9Y5P4 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC22.06■■□□□ 1.12
COL4A3BPQ9Y5P4 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
COL4A3BPQ9Y5P4 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC22.06■■□□□ 1.12
COL4A3BPQ9Y5P4 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC22.06■■□□□ 1.12
COL4A3BPQ9Y5P4 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC22.06■■□□□ 1.12
COL4A3BPQ9Y5P4 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC22.06■■□□□ 1.12
COL4A3BPQ9Y5P4 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
COL4A3BPQ9Y5P4 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC22.06■■□□□ 1.12
COL4A3BPQ9Y5P4 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC22.06■■□□□ 1.12
COL4A3BPQ9Y5P4 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
COL4A3BPQ9Y5P4 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
COL4A3BPQ9Y5P4 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC22.06■■□□□ 1.12
COL4A3BPQ9Y5P4 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC22.06■■□□□ 1.12
COL4A3BPQ9Y5P4 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC22.06■■□□□ 1.12
COL4A3BPQ9Y5P4 MOK-225ENST00000522867 1883 ntTSL 5 BASIC22.06■■□□□ 1.12
COL4A3BPQ9Y5P4 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
COL4A3BPQ9Y5P4 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC22.06■■□□□ 1.12
COL4A3BPQ9Y5P4 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
COL4A3BPQ9Y5P4 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC22.06■■□□□ 1.12
COL4A3BPQ9Y5P4 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
COL4A3BPQ9Y5P4 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC22.05■■□□□ 1.12
COL4A3BPQ9Y5P4 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
COL4A3BPQ9Y5P4 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC22.05■■□□□ 1.12
COL4A3BPQ9Y5P4 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC22.05■■□□□ 1.12
COL4A3BPQ9Y5P4 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
COL4A3BPQ9Y5P4 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC22.05■■□□□ 1.12
COL4A3BPQ9Y5P4 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
COL4A3BPQ9Y5P4 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
COL4A3BPQ9Y5P4 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
COL4A3BPQ9Y5P4 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC22.05■■□□□ 1.12
COL4A3BPQ9Y5P4 AC133681.1-201ENST00000465482 601 ntBASIC22.05■■□□□ 1.12
COL4A3BPQ9Y5P4 AC008550.1-201ENST00000511500 884 ntBASIC22.05■■□□□ 1.12
COL4A3BPQ9Y5P4 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC22.05■■□□□ 1.12
COL4A3BPQ9Y5P4 AL121829.2-201ENST00000620908 328 ntBASIC22.05■■□□□ 1.12
COL4A3BPQ9Y5P4 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC22.05■■□□□ 1.12
COL4A3BPQ9Y5P4 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC22.05■■□□□ 1.12
COL4A3BPQ9Y5P4 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
COL4A3BPQ9Y5P4 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC22.05■■□□□ 1.12
COL4A3BPQ9Y5P4 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
COL4A3BPQ9Y5P4 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC22.05■■□□□ 1.12
COL4A3BPQ9Y5P4 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
COL4A3BPQ9Y5P4 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
COL4A3BPQ9Y5P4 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
COL4A3BPQ9Y5P4 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
COL4A3BPQ9Y5P4 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
COL4A3BPQ9Y5P4 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC22.04■■□□□ 1.12
COL4A3BPQ9Y5P4 KRASP1-201ENST00000407852 552 ntBASIC22.04■■□□□ 1.12
COL4A3BPQ9Y5P4 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC22.04■■□□□ 1.12
COL4A3BPQ9Y5P4 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC22.04■■□□□ 1.12
COL4A3BPQ9Y5P4 PRKY-204ENST00000533551 1019 ntBASIC22.04■■□□□ 1.12
COL4A3BPQ9Y5P4 MAX-217ENST00000557277 728 ntTSL 3 BASIC22.04■■□□□ 1.12
COL4A3BPQ9Y5P4 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC22.04■■□□□ 1.12
COL4A3BPQ9Y5P4 STK25-204ENST00000405585 1643 ntTSL 2 BASIC22.04■■□□□ 1.12
COL4A3BPQ9Y5P4 GOLGA2P11-201ENST00000562660 1621 ntBASIC22.04■■□□□ 1.12
COL4A3BPQ9Y5P4 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC22.04■■□□□ 1.12
COL4A3BPQ9Y5P4 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
COL4A3BPQ9Y5P4 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
COL4A3BPQ9Y5P4 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
COL4A3BPQ9Y5P4 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC22.03■■□□□ 1.12
COL4A3BPQ9Y5P4 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
COL4A3BPQ9Y5P4 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC22.03■■□□□ 1.12
COL4A3BPQ9Y5P4 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
COL4A3BPQ9Y5P4 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC22.03■■□□□ 1.12
COL4A3BPQ9Y5P4 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC22.03■■□□□ 1.12
COL4A3BPQ9Y5P4 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC22.03■■□□□ 1.12
COL4A3BPQ9Y5P4 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC22.03■■□□□ 1.12
COL4A3BPQ9Y5P4 RPS2P4-201ENST00000476944 856 ntBASIC22.03■■□□□ 1.12
COL4A3BPQ9Y5P4 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
COL4A3BPQ9Y5P4 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC22.03■■□□□ 1.12
COL4A3BPQ9Y5P4 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC22.03■■□□□ 1.12
COL4A3BPQ9Y5P4 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC22.03■■□□□ 1.12
COL4A3BPQ9Y5P4 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
COL4A3BPQ9Y5P4 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms