Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
PCDHA3Q9Y5H8 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PCDHA3Q9Y5H8 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC20.59■□□□□ 0.89
PCDHA3Q9Y5H8 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PCDHA3Q9Y5H8 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
PCDHA3Q9Y5H8 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PCDHA3Q9Y5H8 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
PCDHA3Q9Y5H8 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC20.59■□□□□ 0.89
PCDHA3Q9Y5H8 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC20.59■□□□□ 0.89
PCDHA3Q9Y5H8 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
PCDHA3Q9Y5H8 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC20.59■□□□□ 0.89
PCDHA3Q9Y5H8 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC20.59■□□□□ 0.89
PCDHA3Q9Y5H8 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC20.59■□□□□ 0.89
PCDHA3Q9Y5H8 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.59■□□□□ 0.89
PCDHA3Q9Y5H8 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PCDHA3Q9Y5H8 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC20.59■□□□□ 0.89
PCDHA3Q9Y5H8 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC20.59■□□□□ 0.89
PCDHA3Q9Y5H8 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PCDHA3Q9Y5H8 GPX1P1-201ENST00000388829 606 ntBASIC20.59■□□□□ 0.89
PCDHA3Q9Y5H8 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC20.59■□□□□ 0.89
PCDHA3Q9Y5H8 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
PCDHA3Q9Y5H8 LSM12P1-201ENST00000411836 588 ntBASIC20.59■□□□□ 0.89
PCDHA3Q9Y5H8 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PCDHA3Q9Y5H8 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PCDHA3Q9Y5H8 ISCU-212ENST00000547005 795 ntTSL 3 BASIC20.59■□□□□ 0.89
PCDHA3Q9Y5H8 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
PCDHA3Q9Y5H8 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
PCDHA3Q9Y5H8 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
PCDHA3Q9Y5H8 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PCDHA3Q9Y5H8 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
PCDHA3Q9Y5H8 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
PCDHA3Q9Y5H8 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PCDHA3Q9Y5H8 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
PCDHA3Q9Y5H8 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PCDHA3Q9Y5H8 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PCDHA3Q9Y5H8 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC20.58■□□□□ 0.89
PCDHA3Q9Y5H8 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
PCDHA3Q9Y5H8 SERP1-205ENST00000487153 657 ntTSL 4 BASIC20.58■□□□□ 0.89
PCDHA3Q9Y5H8 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
PCDHA3Q9Y5H8 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC20.58■□□□□ 0.89
PCDHA3Q9Y5H8 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PCDHA3Q9Y5H8 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
PCDHA3Q9Y5H8 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
PCDHA3Q9Y5H8 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
PCDHA3Q9Y5H8 AC004408.2-201ENST00000623613 2777 ntBASIC20.58■□□□□ 0.88
PCDHA3Q9Y5H8 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC20.58■□□□□ 0.88
PCDHA3Q9Y5H8 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
PCDHA3Q9Y5H8 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
PCDHA3Q9Y5H8 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
PCDHA3Q9Y5H8 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC20.58■□□□□ 0.88
PCDHA3Q9Y5H8 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
PCDHA3Q9Y5H8 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC20.58■□□□□ 0.88
PCDHA3Q9Y5H8 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PCDHA3Q9Y5H8 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
PCDHA3Q9Y5H8 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC20.57■□□□□ 0.88
PCDHA3Q9Y5H8 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC20.57■□□□□ 0.88
PCDHA3Q9Y5H8 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC20.57■□□□□ 0.88
PCDHA3Q9Y5H8 AC018553.1-201ENST00000616682 1458 ntBASIC20.57■□□□□ 0.88
PCDHA3Q9Y5H8 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PCDHA3Q9Y5H8 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC20.57■□□□□ 0.88
PCDHA3Q9Y5H8 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC20.57■□□□□ 0.88
PCDHA3Q9Y5H8 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
PCDHA3Q9Y5H8 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
PCDHA3Q9Y5H8 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
PCDHA3Q9Y5H8 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC20.57■□□□□ 0.88
PCDHA3Q9Y5H8 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
PCDHA3Q9Y5H8 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PCDHA3Q9Y5H8 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC20.57■□□□□ 0.88
PCDHA3Q9Y5H8 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
PCDHA3Q9Y5H8 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PCDHA3Q9Y5H8 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC20.57■□□□□ 0.88
PCDHA3Q9Y5H8 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC20.57■□□□□ 0.88
PCDHA3Q9Y5H8 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC20.57■□□□□ 0.88
PCDHA3Q9Y5H8 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
PCDHA3Q9Y5H8 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC20.57■□□□□ 0.88
PCDHA3Q9Y5H8 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
PCDHA3Q9Y5H8 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
PCDHA3Q9Y5H8 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC20.57■□□□□ 0.88
PCDHA3Q9Y5H8 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC20.57■□□□□ 0.88
PCDHA3Q9Y5H8 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC20.57■□□□□ 0.88
PCDHA3Q9Y5H8 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
PCDHA3Q9Y5H8 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PCDHA3Q9Y5H8 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC20.57■□□□□ 0.88
PCDHA3Q9Y5H8 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PCDHA3Q9Y5H8 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PCDHA3Q9Y5H8 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC20.56■□□□□ 0.88
PCDHA3Q9Y5H8 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PCDHA3Q9Y5H8 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
PCDHA3Q9Y5H8 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
PCDHA3Q9Y5H8 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
PCDHA3Q9Y5H8 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PCDHA3Q9Y5H8 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PCDHA3Q9Y5H8 AC116351.2-201ENST00000606540 1585 ntBASIC20.56■□□□□ 0.88
PCDHA3Q9Y5H8 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC20.56■□□□□ 0.88
PCDHA3Q9Y5H8 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC20.56■□□□□ 0.88
PCDHA3Q9Y5H8 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC20.56■□□□□ 0.88
PCDHA3Q9Y5H8 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
PCDHA3Q9Y5H8 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC20.56■□□□□ 0.88
PCDHA3Q9Y5H8 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
PCDHA3Q9Y5H8 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC20.55■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms