Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CISHQ9NSE2 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC21.05■□□□□ 0.96
CISHQ9NSE2 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC21.05■□□□□ 0.96
CISHQ9NSE2 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC21.05■□□□□ 0.96
CISHQ9NSE2 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CISHQ9NSE2 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC21.05■□□□□ 0.96
CISHQ9NSE2 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC21.05■□□□□ 0.96
CISHQ9NSE2 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CISHQ9NSE2 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC21.05■□□□□ 0.96
CISHQ9NSE2 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CISHQ9NSE2 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC21.05■□□□□ 0.96
CISHQ9NSE2 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CISHQ9NSE2 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC21.05■□□□□ 0.96
CISHQ9NSE2 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC21.05■□□□□ 0.96
CISHQ9NSE2 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC21.05■□□□□ 0.96
CISHQ9NSE2 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CISHQ9NSE2 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC21.05■□□□□ 0.96
CISHQ9NSE2 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
CISHQ9NSE2 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CISHQ9NSE2 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CISHQ9NSE2 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC21.05■□□□□ 0.96
CISHQ9NSE2 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
CISHQ9NSE2 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC21.04■□□□□ 0.96
CISHQ9NSE2 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
CISHQ9NSE2 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC21.04■□□□□ 0.96
CISHQ9NSE2 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CISHQ9NSE2 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CISHQ9NSE2 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CISHQ9NSE2 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CISHQ9NSE2 TREX2-204ENST00000370212 861 ntTSL 5 BASIC21.04■□□□□ 0.96
CISHQ9NSE2 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
CISHQ9NSE2 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CISHQ9NSE2 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
CISHQ9NSE2 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC21.04■□□□□ 0.96
CISHQ9NSE2 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC21.04■□□□□ 0.96
CISHQ9NSE2 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC21.04■□□□□ 0.96
CISHQ9NSE2 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC21.04■□□□□ 0.96
CISHQ9NSE2 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC21.04■□□□□ 0.96
CISHQ9NSE2 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
CISHQ9NSE2 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
CISHQ9NSE2 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CISHQ9NSE2 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
CISHQ9NSE2 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC21.04■□□□□ 0.96
CISHQ9NSE2 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC21.04■□□□□ 0.96
CISHQ9NSE2 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC21.03■□□□□ 0.96
CISHQ9NSE2 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
CISHQ9NSE2 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
CISHQ9NSE2 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CISHQ9NSE2 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
CISHQ9NSE2 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CISHQ9NSE2 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC21.03■□□□□ 0.96
CISHQ9NSE2 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC21.03■□□□□ 0.96
CISHQ9NSE2 AP006587.1-201ENST00000534129 1502 ntBASIC21.03■□□□□ 0.96
CISHQ9NSE2 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CISHQ9NSE2 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CISHQ9NSE2 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
CISHQ9NSE2 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CISHQ9NSE2 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CISHQ9NSE2 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CISHQ9NSE2 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CISHQ9NSE2 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
CISHQ9NSE2 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC21.02■□□□□ 0.96
CISHQ9NSE2 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
CISHQ9NSE2 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CISHQ9NSE2 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CISHQ9NSE2 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CISHQ9NSE2 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CISHQ9NSE2 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CISHQ9NSE2 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CISHQ9NSE2 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC21.02■□□□□ 0.96
CISHQ9NSE2 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC21.02■□□□□ 0.96
CISHQ9NSE2 Six3os1_6.1-201ENST00000620790 196 ntBASIC21.02■□□□□ 0.96
CISHQ9NSE2 ITM2C-210ENST00000620962 501 ntBASIC21.02■□□□□ 0.96
CISHQ9NSE2 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CISHQ9NSE2 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC21.02■□□□□ 0.96
CISHQ9NSE2 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
CISHQ9NSE2 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC21.02■□□□□ 0.96
CISHQ9NSE2 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
CISHQ9NSE2 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
CISHQ9NSE2 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.95
CISHQ9NSE2 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
CISHQ9NSE2 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC21.01■□□□□ 0.95
CISHQ9NSE2 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CISHQ9NSE2 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
CISHQ9NSE2 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC21.01■□□□□ 0.95
CISHQ9NSE2 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CISHQ9NSE2 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC21.01■□□□□ 0.95
CISHQ9NSE2 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CISHQ9NSE2 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CISHQ9NSE2 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC21.01■□□□□ 0.95
CISHQ9NSE2 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC21.01■□□□□ 0.95
CISHQ9NSE2 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CISHQ9NSE2 ABHD17AP1-201ENST00000358206 933 ntBASIC21.01■□□□□ 0.95
CISHQ9NSE2 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC21.01■□□□□ 0.95
CISHQ9NSE2 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC21.01■□□□□ 0.95
CISHQ9NSE2 PRKY-204ENST00000533551 1019 ntBASIC21.01■□□□□ 0.95
CISHQ9NSE2 RN7SL471P-201ENST00000580476 299 ntBASIC21.01■□□□□ 0.95
CISHQ9NSE2 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CISHQ9NSE2 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
CISHQ9NSE2 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC21.01■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 15.3 ms