Protein–RNA interactions for Protein: Q9H347

UBQLN3, Ubiquilin-3, humanhuman

Predictions only

Length 655 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN3Q9H347 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
UBQLN3Q9H347 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
UBQLN3Q9H347 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC18.26■□□□□ 0.51
UBQLN3Q9H347 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC18.26■□□□□ 0.51
UBQLN3Q9H347 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
UBQLN3Q9H347 RER1-204ENST00000378518 522 ntTSL 3 BASIC18.26■□□□□ 0.51
UBQLN3Q9H347 AL390719.1-204ENST00000412397 1219 ntBASIC18.26■□□□□ 0.51
UBQLN3Q9H347 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC18.26■□□□□ 0.51
UBQLN3Q9H347 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC18.26■□□□□ 0.51
UBQLN3Q9H347 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
UBQLN3Q9H347 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC18.26■□□□□ 0.51
UBQLN3Q9H347 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
UBQLN3Q9H347 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
UBQLN3Q9H347 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
UBQLN3Q9H347 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
UBQLN3Q9H347 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC18.25■□□□□ 0.51
UBQLN3Q9H347 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
UBQLN3Q9H347 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
UBQLN3Q9H347 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
UBQLN3Q9H347 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
UBQLN3Q9H347 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC18.25■□□□□ 0.51
UBQLN3Q9H347 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
UBQLN3Q9H347 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
UBQLN3Q9H347 KRT17P3-201ENST00000420566 1262 ntBASIC18.25■□□□□ 0.51
UBQLN3Q9H347 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC18.25■□□□□ 0.51
UBQLN3Q9H347 ABHD17AP6-201ENST00000458502 1044 ntBASIC18.25■□□□□ 0.51
UBQLN3Q9H347 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC18.25■□□□□ 0.51
UBQLN3Q9H347 AC006557.6-201ENST00000623071 864 ntBASIC18.25■□□□□ 0.51
UBQLN3Q9H347 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
UBQLN3Q9H347 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC18.25■□□□□ 0.51
UBQLN3Q9H347 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
UBQLN3Q9H347 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC18.25■□□□□ 0.51
UBQLN3Q9H347 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
UBQLN3Q9H347 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
UBQLN3Q9H347 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC18.25■□□□□ 0.51
UBQLN3Q9H347 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC18.24■□□□□ 0.51
UBQLN3Q9H347 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
UBQLN3Q9H347 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
UBQLN3Q9H347 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
UBQLN3Q9H347 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
UBQLN3Q9H347 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC18.24■□□□□ 0.51
UBQLN3Q9H347 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
UBQLN3Q9H347 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
UBQLN3Q9H347 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC18.24■□□□□ 0.51
UBQLN3Q9H347 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
UBQLN3Q9H347 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
UBQLN3Q9H347 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
UBQLN3Q9H347 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC18.24■□□□□ 0.51
UBQLN3Q9H347 GCSHP5-201ENST00000443090 522 ntBASIC18.24■□□□□ 0.51
UBQLN3Q9H347 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
UBQLN3Q9H347 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
UBQLN3Q9H347 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC18.24■□□□□ 0.51
UBQLN3Q9H347 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
UBQLN3Q9H347 AC069544.1-201ENST00000609399 999 ntBASIC18.24■□□□□ 0.51
UBQLN3Q9H347 AC120498.8-201ENST00000614275 531 ntBASIC18.24■□□□□ 0.51
UBQLN3Q9H347 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
UBQLN3Q9H347 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
UBQLN3Q9H347 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC18.24■□□□□ 0.51
UBQLN3Q9H347 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC18.24■□□□□ 0.51
UBQLN3Q9H347 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
UBQLN3Q9H347 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
UBQLN3Q9H347 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
UBQLN3Q9H347 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
UBQLN3Q9H347 AL691432.2-201ENST00000607222 2038 ntBASIC18.23■□□□□ 0.51
UBQLN3Q9H347 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC18.23■□□□□ 0.51
UBQLN3Q9H347 AL158211.5-201ENST00000623583 2518 ntBASIC18.23■□□□□ 0.51
UBQLN3Q9H347 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
UBQLN3Q9H347 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
UBQLN3Q9H347 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
UBQLN3Q9H347 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
UBQLN3Q9H347 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC18.23■□□□□ 0.51
UBQLN3Q9H347 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
UBQLN3Q9H347 HES2-206ENST00000489730 730 ntTSL 2 BASIC18.23■□□□□ 0.51
UBQLN3Q9H347 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC18.23■□□□□ 0.51
UBQLN3Q9H347 AC233263.1-201ENST00000578059 224 ntBASIC18.23■□□□□ 0.51
UBQLN3Q9H347 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
UBQLN3Q9H347 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
UBQLN3Q9H347 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
UBQLN3Q9H347 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
UBQLN3Q9H347 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
UBQLN3Q9H347 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
UBQLN3Q9H347 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC18.23■□□□□ 0.51
UBQLN3Q9H347 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC18.23■□□□□ 0.51
UBQLN3Q9H347 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC18.23■□□□□ 0.51
UBQLN3Q9H347 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC18.22■□□□□ 0.51
UBQLN3Q9H347 H19-201ENST00000411754 1788 ntTSL 5 BASIC18.22■□□□□ 0.51
UBQLN3Q9H347 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC18.22■□□□□ 0.51
UBQLN3Q9H347 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC18.22■□□□□ 0.51
UBQLN3Q9H347 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
UBQLN3Q9H347 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
UBQLN3Q9H347 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
UBQLN3Q9H347 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
UBQLN3Q9H347 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
UBQLN3Q9H347 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
UBQLN3Q9H347 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
UBQLN3Q9H347 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC18.22■□□□□ 0.51
UBQLN3Q9H347 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
UBQLN3Q9H347 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
UBQLN3Q9H347 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
UBQLN3Q9H347 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms