Protein–RNA interactions for Protein: Q9H270

VPS11, Vacuolar protein sorting-associated protein 11 homolog, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11Q9H270 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS11Q9H270 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS11Q9H270 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS11Q9H270 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC19.8■□□□□ 0.76
VPS11Q9H270 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS11Q9H270 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS11Q9H270 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC19.8■□□□□ 0.76
VPS11Q9H270 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC19.8■□□□□ 0.76
VPS11Q9H270 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS11Q9H270 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS11Q9H270 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS11Q9H270 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VPS11Q9H270 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
VPS11Q9H270 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS11Q9H270 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS11Q9H270 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC19.79■□□□□ 0.76
VPS11Q9H270 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS11Q9H270 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC19.79■□□□□ 0.76
VPS11Q9H270 KRT8P17-201ENST00000453110 1448 ntBASIC19.79■□□□□ 0.76
VPS11Q9H270 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS11Q9H270 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS11Q9H270 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS11Q9H270 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS11Q9H270 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
VPS11Q9H270 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS11Q9H270 AC007322.4-201ENST00000509611 723 ntBASIC19.79■□□□□ 0.76
VPS11Q9H270 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC19.79■□□□□ 0.76
VPS11Q9H270 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC19.79■□□□□ 0.76
VPS11Q9H270 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC19.79■□□□□ 0.76
VPS11Q9H270 PLLP-204ENST00000569059 665 ntTSL 3 BASIC19.79■□□□□ 0.76
VPS11Q9H270 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
VPS11Q9H270 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
VPS11Q9H270 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
VPS11Q9H270 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS11Q9H270 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC19.79■□□□□ 0.76
VPS11Q9H270 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
VPS11Q9H270 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VPS11Q9H270 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS11Q9H270 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS11Q9H270 TP73-202ENST00000354437 2140 ntTSL 5 BASIC19.78■□□□□ 0.76
VPS11Q9H270 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
VPS11Q9H270 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS11Q9H270 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC19.78■□□□□ 0.76
VPS11Q9H270 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS11Q9H270 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS11Q9H270 GAS2L1P2-201ENST00000436355 1356 ntBASIC19.78■□□□□ 0.76
VPS11Q9H270 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
VPS11Q9H270 AL032819.2-201ENST00000624543 2162 ntBASIC19.78■□□□□ 0.76
VPS11Q9H270 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS11Q9H270 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS11Q9H270 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC19.78■□□□□ 0.76
VPS11Q9H270 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VPS11Q9H270 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS11Q9H270 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS11Q9H270 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS11Q9H270 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC19.77■□□□□ 0.76
VPS11Q9H270 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
VPS11Q9H270 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC19.77■□□□□ 0.76
VPS11Q9H270 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC19.77■□□□□ 0.76
VPS11Q9H270 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS11Q9H270 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS11Q9H270 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
VPS11Q9H270 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS11Q9H270 MCRIP2P1-201ENST00000394346 511 ntBASIC19.77■□□□□ 0.76
VPS11Q9H270 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
VPS11Q9H270 KRT18P11-201ENST00000435214 1283 ntBASIC19.77■□□□□ 0.76
VPS11Q9H270 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC19.77■□□□□ 0.76
VPS11Q9H270 AC137761.2-201ENST00000561729 223 ntBASIC19.77■□□□□ 0.76
VPS11Q9H270 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC19.77■□□□□ 0.76
VPS11Q9H270 AC145350.3-201ENST00000569033 163 ntBASIC19.77■□□□□ 0.76
VPS11Q9H270 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC19.77■□□□□ 0.76
VPS11Q9H270 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC19.77■□□□□ 0.76
VPS11Q9H270 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC19.77■□□□□ 0.76
VPS11Q9H270 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
VPS11Q9H270 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC19.77■□□□□ 0.76
VPS11Q9H270 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS11Q9H270 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
VPS11Q9H270 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
VPS11Q9H270 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC19.77■□□□□ 0.76
VPS11Q9H270 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS11Q9H270 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
VPS11Q9H270 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS11Q9H270 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
VPS11Q9H270 KRT16P6-202ENST00000425692 1426 ntBASIC19.76■□□□□ 0.75
VPS11Q9H270 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VPS11Q9H270 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS11Q9H270 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS11Q9H270 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC19.76■□□□□ 0.75
VPS11Q9H270 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS11Q9H270 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
VPS11Q9H270 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC19.76■□□□□ 0.75
VPS11Q9H270 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS11Q9H270 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS11Q9H270 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS11Q9H270 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC19.76■□□□□ 0.75
VPS11Q9H270 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VPS11Q9H270 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC19.76■□□□□ 0.75
VPS11Q9H270 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS11Q9H270 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS11Q9H270 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms