Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
NKX3-1Q99801 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
NKX3-1Q99801 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
NKX3-1Q99801 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
NKX3-1Q99801 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
NKX3-1Q99801 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
NKX3-1Q99801 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC17.15■□□□□ 0.34
NKX3-1Q99801 TERF1P5-201ENST00000477545 1207 ntBASIC17.15■□□□□ 0.34
NKX3-1Q99801 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC17.15■□□□□ 0.34
NKX3-1Q99801 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC17.15■□□□□ 0.34
NKX3-1Q99801 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC17.15■□□□□ 0.34
NKX3-1Q99801 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
NKX3-1Q99801 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
NKX3-1Q99801 TP73-202ENST00000354437 2140 ntTSL 5 BASIC17.15■□□□□ 0.34
NKX3-1Q99801 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
NKX3-1Q99801 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
NKX3-1Q99801 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC17.15■□□□□ 0.34
NKX3-1Q99801 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
NKX3-1Q99801 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
NKX3-1Q99801 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
NKX3-1Q99801 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC17.15■□□□□ 0.34
NKX3-1Q99801 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
NKX3-1Q99801 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC17.15■□□□□ 0.34
NKX3-1Q99801 BX323043.1-201ENST00000641006 1765 ntBASIC17.15■□□□□ 0.34
NKX3-1Q99801 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.34
NKX3-1Q99801 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC17.14■□□□□ 0.34
NKX3-1Q99801 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.34
NKX3-1Q99801 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC17.14■□□□□ 0.33
NKX3-1Q99801 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
NKX3-1Q99801 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
NKX3-1Q99801 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC17.14■□□□□ 0.33
NKX3-1Q99801 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
NKX3-1Q99801 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
NKX3-1Q99801 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
NKX3-1Q99801 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
NKX3-1Q99801 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
NKX3-1Q99801 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
NKX3-1Q99801 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
NKX3-1Q99801 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
NKX3-1Q99801 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC17.14■□□□□ 0.33
NKX3-1Q99801 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC17.14■□□□□ 0.33
NKX3-1Q99801 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC17.14■□□□□ 0.33
NKX3-1Q99801 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC17.14■□□□□ 0.33
NKX3-1Q99801 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
NKX3-1Q99801 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC17.14■□□□□ 0.33
NKX3-1Q99801 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
NKX3-1Q99801 CASP6-205ENST00000505486 538 ntTSL 4 BASIC17.14■□□□□ 0.33
NKX3-1Q99801 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC17.14■□□□□ 0.33
NKX3-1Q99801 PLLP-204ENST00000569059 665 ntTSL 3 BASIC17.14■□□□□ 0.33
NKX3-1Q99801 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC17.14■□□□□ 0.33
NKX3-1Q99801 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
NKX3-1Q99801 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC17.14■□□□□ 0.33
NKX3-1Q99801 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
NKX3-1Q99801 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
NKX3-1Q99801 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC17.14■□□□□ 0.33
NKX3-1Q99801 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
NKX3-1Q99801 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
NKX3-1Q99801 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC17.13■□□□□ 0.33
NKX3-1Q99801 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
NKX3-1Q99801 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC17.13■□□□□ 0.33
NKX3-1Q99801 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NKX3-1Q99801 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC17.13■□□□□ 0.33
NKX3-1Q99801 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
NKX3-1Q99801 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
NKX3-1Q99801 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NKX3-1Q99801 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NKX3-1Q99801 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
NKX3-1Q99801 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC17.13■□□□□ 0.33
NKX3-1Q99801 AC093503.3-201ENST00000624917 2352 ntBASIC17.13■□□□□ 0.33
NKX3-1Q99801 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC17.13■□□□□ 0.33
NKX3-1Q99801 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
NKX3-1Q99801 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC17.13■□□□□ 0.33
NKX3-1Q99801 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC17.13■□□□□ 0.33
NKX3-1Q99801 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
NKX3-1Q99801 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NKX3-1Q99801 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NKX3-1Q99801 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
NKX3-1Q99801 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NKX3-1Q99801 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
NKX3-1Q99801 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NKX3-1Q99801 NEFHP1-201ENST00000412845 2629 ntBASIC17.13■□□□□ 0.33
NKX3-1Q99801 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
NKX3-1Q99801 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
NKX3-1Q99801 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NKX3-1Q99801 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC17.12■□□□□ 0.33
NKX3-1Q99801 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
NKX3-1Q99801 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
NKX3-1Q99801 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC17.12■□□□□ 0.33
NKX3-1Q99801 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
NKX3-1Q99801 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
NKX3-1Q99801 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
NKX3-1Q99801 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NKX3-1Q99801 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC17.12■□□□□ 0.33
NKX3-1Q99801 STK25-204ENST00000405585 1643 ntTSL 2 BASIC17.12■□□□□ 0.33
NKX3-1Q99801 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC17.12■□□□□ 0.33
NKX3-1Q99801 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC17.12■□□□□ 0.33
NKX3-1Q99801 DBI-210ENST00000542275 757 ntTSL 5 BASIC17.12■□□□□ 0.33
NKX3-1Q99801 AL591742.1-201ENST00000604433 565 ntBASIC17.12■□□□□ 0.33
NKX3-1Q99801 AC092437.1-201ENST00000624794 1048 ntBASIC17.12■□□□□ 0.33
NKX3-1Q99801 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms