Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC28AQ8IWP9 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC16.46■□□□□ 0.23
CCDC28AQ8IWP9 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
CCDC28AQ8IWP9 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC28AQ8IWP9 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC28AQ8IWP9 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC16.46■□□□□ 0.23
CCDC28AQ8IWP9 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC16.46■□□□□ 0.23
CCDC28AQ8IWP9 AC021242.3-201ENST00000607598 1377 ntBASIC16.46■□□□□ 0.23
CCDC28AQ8IWP9 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC28AQ8IWP9 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC28AQ8IWP9 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC28AQ8IWP9 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC28AQ8IWP9 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC16.46■□□□□ 0.23
CCDC28AQ8IWP9 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
CCDC28AQ8IWP9 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
CCDC28AQ8IWP9 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC16.46■□□□□ 0.22
CCDC28AQ8IWP9 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC28AQ8IWP9 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC28AQ8IWP9 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
CCDC28AQ8IWP9 AC018695.7-201ENST00000624587 2492 ntBASIC16.45■□□□□ 0.22
CCDC28AQ8IWP9 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC28AQ8IWP9 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC16.45■□□□□ 0.22
CCDC28AQ8IWP9 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC16.45■□□□□ 0.22
CCDC28AQ8IWP9 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC16.45■□□□□ 0.22
CCDC28AQ8IWP9 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC28AQ8IWP9 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC16.45■□□□□ 0.22
CCDC28AQ8IWP9 AL162727.3-201ENST00000635661 2787 ntBASIC16.45■□□□□ 0.22
CCDC28AQ8IWP9 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
CCDC28AQ8IWP9 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC28AQ8IWP9 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC28AQ8IWP9 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC28AQ8IWP9 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC16.45■□□□□ 0.22
CCDC28AQ8IWP9 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC16.45■□□□□ 0.22
CCDC28AQ8IWP9 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
CCDC28AQ8IWP9 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC28AQ8IWP9 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC16.45■□□□□ 0.22
CCDC28AQ8IWP9 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC28AQ8IWP9 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC16.45■□□□□ 0.22
CCDC28AQ8IWP9 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC28AQ8IWP9 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC28AQ8IWP9 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC28AQ8IWP9 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC28AQ8IWP9 CROCCP3-202ENST00000420820 1947 ntBASIC16.45■□□□□ 0.22
CCDC28AQ8IWP9 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC28AQ8IWP9 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC28AQ8IWP9 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC28AQ8IWP9 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC28AQ8IWP9 AL596257.1-201ENST00000641463 2694 ntBASIC16.44■□□□□ 0.22
CCDC28AQ8IWP9 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC16.44■□□□□ 0.22
CCDC28AQ8IWP9 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC28AQ8IWP9 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
CCDC28AQ8IWP9 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
CCDC28AQ8IWP9 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC28AQ8IWP9 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC16.44■□□□□ 0.22
CCDC28AQ8IWP9 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC28AQ8IWP9 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC16.44■□□□□ 0.22
CCDC28AQ8IWP9 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC28AQ8IWP9 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC28AQ8IWP9 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC28AQ8IWP9 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC28AQ8IWP9 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
CCDC28AQ8IWP9 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
CCDC28AQ8IWP9 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC28AQ8IWP9 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC28AQ8IWP9 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC16.44■□□□□ 0.22
CCDC28AQ8IWP9 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
CCDC28AQ8IWP9 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
CCDC28AQ8IWP9 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC28AQ8IWP9 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC28AQ8IWP9 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC28AQ8IWP9 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC28AQ8IWP9 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC28AQ8IWP9 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC16.43■□□□□ 0.22
CCDC28AQ8IWP9 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC28AQ8IWP9 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC16.43■□□□□ 0.22
CCDC28AQ8IWP9 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC16.43■□□□□ 0.22
CCDC28AQ8IWP9 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC28AQ8IWP9 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC16.43■□□□□ 0.22
CCDC28AQ8IWP9 CLTA-210ENST00000540080 989 ntTSL 2 BASIC16.43■□□□□ 0.22
CCDC28AQ8IWP9 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC16.43■□□□□ 0.22
CCDC28AQ8IWP9 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC16.43■□□□□ 0.22
CCDC28AQ8IWP9 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC16.43■□□□□ 0.22
CCDC28AQ8IWP9 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC16.43■□□□□ 0.22
CCDC28AQ8IWP9 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC28AQ8IWP9 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC16.43■□□□□ 0.22
CCDC28AQ8IWP9 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC16.43■□□□□ 0.22
CCDC28AQ8IWP9 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC28AQ8IWP9 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC28AQ8IWP9 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
CCDC28AQ8IWP9 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC28AQ8IWP9 AC005703.6-201ENST00000623265 1329 ntBASIC16.43■□□□□ 0.22
CCDC28AQ8IWP9 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC28AQ8IWP9 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC16.42■□□□□ 0.22
CCDC28AQ8IWP9 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC28AQ8IWP9 BICD1-207ENST00000551848 1962 ntBASIC16.42■□□□□ 0.22
CCDC28AQ8IWP9 FER1L4-210ENST00000615531 5998 ntBASIC16.42■□□□□ 0.22
CCDC28AQ8IWP9 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC28AQ8IWP9 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC28AQ8IWP9 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC28AQ8IWP9 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC16.42■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms