Protein–RNA interactions for Protein: Q6ZNA4

RNF111, E3 ubiquitin-protein ligase Arkadia, humanhuman

Predictions only

Length 994 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF111Q6ZNA4 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC19.12■□□□□ 0.65
RNF111Q6ZNA4 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
RNF111Q6ZNA4 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
RNF111Q6ZNA4 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RNF111Q6ZNA4 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RNF111Q6ZNA4 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC19.12■□□□□ 0.65
RNF111Q6ZNA4 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RNF111Q6ZNA4 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC19.12■□□□□ 0.65
RNF111Q6ZNA4 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
RNF111Q6ZNA4 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC19.11■□□□□ 0.65
RNF111Q6ZNA4 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC19.11■□□□□ 0.65
RNF111Q6ZNA4 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC19.11■□□□□ 0.65
RNF111Q6ZNA4 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
RNF111Q6ZNA4 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC19.11■□□□□ 0.65
RNF111Q6ZNA4 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC19.11■□□□□ 0.65
RNF111Q6ZNA4 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC19.11■□□□□ 0.65
RNF111Q6ZNA4 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
RNF111Q6ZNA4 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
RNF111Q6ZNA4 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
RNF111Q6ZNA4 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
RNF111Q6ZNA4 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC19.11■□□□□ 0.65
RNF111Q6ZNA4 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
RNF111Q6ZNA4 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC19.11■□□□□ 0.65
RNF111Q6ZNA4 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
RNF111Q6ZNA4 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
RNF111Q6ZNA4 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC19.11■□□□□ 0.65
RNF111Q6ZNA4 AC105036.2-201ENST00000569468 176 ntBASIC19.11■□□□□ 0.65
RNF111Q6ZNA4 WT1-AS_3.1-201ENST00000613262 234 ntBASIC19.11■□□□□ 0.65
RNF111Q6ZNA4 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC19.11■□□□□ 0.65
RNF111Q6ZNA4 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
RNF111Q6ZNA4 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC19.11■□□□□ 0.65
RNF111Q6ZNA4 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
RNF111Q6ZNA4 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC19.11■□□□□ 0.65
RNF111Q6ZNA4 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC19.11■□□□□ 0.65
RNF111Q6ZNA4 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC19.11■□□□□ 0.65
RNF111Q6ZNA4 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
RNF111Q6ZNA4 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
RNF111Q6ZNA4 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
RNF111Q6ZNA4 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
RNF111Q6ZNA4 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
RNF111Q6ZNA4 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC19.1■□□□□ 0.65
RNF111Q6ZNA4 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC19.1■□□□□ 0.65
RNF111Q6ZNA4 GPX1P1-201ENST00000388829 606 ntBASIC19.1■□□□□ 0.65
RNF111Q6ZNA4 NCF1B-203ENST00000435988 1254 ntBASIC19.1■□□□□ 0.65
RNF111Q6ZNA4 AC083906.2-201ENST00000511578 360 ntBASIC19.1■□□□□ 0.65
RNF111Q6ZNA4 OAS3-207ENST00000551007 998 ntTSL 2 BASIC19.1■□□□□ 0.65
RNF111Q6ZNA4 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC19.1■□□□□ 0.65
RNF111Q6ZNA4 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC19.1■□□□□ 0.65
RNF111Q6ZNA4 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC19.1■□□□□ 0.65
RNF111Q6ZNA4 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC19.1■□□□□ 0.65
RNF111Q6ZNA4 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC19.1■□□□□ 0.65
RNF111Q6ZNA4 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
RNF111Q6ZNA4 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC19.1■□□□□ 0.65
RNF111Q6ZNA4 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
RNF111Q6ZNA4 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
RNF111Q6ZNA4 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
RNF111Q6ZNA4 AL138781.2-201ENST00000617896 1843 ntBASIC19.09■□□□□ 0.65
RNF111Q6ZNA4 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
RNF111Q6ZNA4 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
RNF111Q6ZNA4 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC19.09■□□□□ 0.65
RNF111Q6ZNA4 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC19.09■□□□□ 0.65
RNF111Q6ZNA4 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
RNF111Q6ZNA4 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC19.09■□□□□ 0.65
RNF111Q6ZNA4 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
RNF111Q6ZNA4 METTL15-202ENST00000403099 795 ntTSL 5 BASIC19.09■□□□□ 0.65
RNF111Q6ZNA4 AL512625.2-201ENST00000417533 625 ntBASIC19.09■□□□□ 0.65
RNF111Q6ZNA4 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC19.09■□□□□ 0.65
RNF111Q6ZNA4 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC19.09■□□□□ 0.65
RNF111Q6ZNA4 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC19.09■□□□□ 0.65
RNF111Q6ZNA4 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC19.09■□□□□ 0.65
RNF111Q6ZNA4 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
RNF111Q6ZNA4 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
RNF111Q6ZNA4 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
RNF111Q6ZNA4 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
RNF111Q6ZNA4 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
RNF111Q6ZNA4 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC19.09■□□□□ 0.65
RNF111Q6ZNA4 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
RNF111Q6ZNA4 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC19.09■□□□□ 0.65
RNF111Q6ZNA4 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
RNF111Q6ZNA4 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
RNF111Q6ZNA4 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
RNF111Q6ZNA4 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
RNF111Q6ZNA4 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
RNF111Q6ZNA4 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
RNF111Q6ZNA4 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
RNF111Q6ZNA4 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
RNF111Q6ZNA4 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC19.08■□□□□ 0.65
RNF111Q6ZNA4 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
RNF111Q6ZNA4 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
RNF111Q6ZNA4 MAP2K4P1-201ENST00000438453 1195 ntBASIC19.08■□□□□ 0.64
RNF111Q6ZNA4 AC093787.1-201ENST00000450396 207 ntBASIC19.08■□□□□ 0.64
RNF111Q6ZNA4 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC19.08■□□□□ 0.64
RNF111Q6ZNA4 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC19.08■□□□□ 0.64
RNF111Q6ZNA4 AC100791.3-201ENST00000617619 330 ntBASIC19.08■□□□□ 0.64
RNF111Q6ZNA4 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC19.08■□□□□ 0.64
RNF111Q6ZNA4 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
RNF111Q6ZNA4 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
RNF111Q6ZNA4 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC19.08■□□□□ 0.64
RNF111Q6ZNA4 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
RNF111Q6ZNA4 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms