Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
TRIM40Q6P9F5 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
TRIM40Q6P9F5 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
TRIM40Q6P9F5 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC18.91■□□□□ 0.62
TRIM40Q6P9F5 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
TRIM40Q6P9F5 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
TRIM40Q6P9F5 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC18.91■□□□□ 0.62
TRIM40Q6P9F5 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC18.91■□□□□ 0.62
TRIM40Q6P9F5 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC18.91■□□□□ 0.62
TRIM40Q6P9F5 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC18.91■□□□□ 0.62
TRIM40Q6P9F5 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC18.91■□□□□ 0.62
TRIM40Q6P9F5 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
TRIM40Q6P9F5 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TRIM40Q6P9F5 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
TRIM40Q6P9F5 HES2-206ENST00000489730 730 ntTSL 2 BASIC18.91■□□□□ 0.62
TRIM40Q6P9F5 SLC29A4P2-201ENST00000504749 1089 ntBASIC18.91■□□□□ 0.62
TRIM40Q6P9F5 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TRIM40Q6P9F5 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC18.91■□□□□ 0.62
TRIM40Q6P9F5 SOX15-203ENST00000570788 1093 ntBASIC18.91■□□□□ 0.62
TRIM40Q6P9F5 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC18.91■□□□□ 0.62
TRIM40Q6P9F5 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
TRIM40Q6P9F5 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
TRIM40Q6P9F5 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TRIM40Q6P9F5 PHGDH-210ENST00000641115 1638 ntBASIC18.91■□□□□ 0.62
TRIM40Q6P9F5 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC18.91■□□□□ 0.62
TRIM40Q6P9F5 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
TRIM40Q6P9F5 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TRIM40Q6P9F5 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
TRIM40Q6P9F5 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
TRIM40Q6P9F5 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
TRIM40Q6P9F5 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC18.9■□□□□ 0.62
TRIM40Q6P9F5 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC18.9■□□□□ 0.62
TRIM40Q6P9F5 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
TRIM40Q6P9F5 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TRIM40Q6P9F5 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TRIM40Q6P9F5 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
TRIM40Q6P9F5 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
TRIM40Q6P9F5 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC18.9■□□□□ 0.62
TRIM40Q6P9F5 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC18.9■□□□□ 0.62
TRIM40Q6P9F5 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
TRIM40Q6P9F5 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC18.9■□□□□ 0.62
TRIM40Q6P9F5 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC18.9■□□□□ 0.62
TRIM40Q6P9F5 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC18.9■□□□□ 0.62
TRIM40Q6P9F5 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC18.9■□□□□ 0.62
TRIM40Q6P9F5 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC18.9■□□□□ 0.62
TRIM40Q6P9F5 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
TRIM40Q6P9F5 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TRIM40Q6P9F5 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TRIM40Q6P9F5 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
TRIM40Q6P9F5 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC18.9■□□□□ 0.62
TRIM40Q6P9F5 LBX2-AS1-202ENST00000603175 2083 ntBASIC18.89■□□□□ 0.62
TRIM40Q6P9F5 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC18.89■□□□□ 0.62
TRIM40Q6P9F5 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC18.89■□□□□ 0.62
TRIM40Q6P9F5 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
TRIM40Q6P9F5 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TRIM40Q6P9F5 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TRIM40Q6P9F5 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TRIM40Q6P9F5 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
TRIM40Q6P9F5 CALM3-202ENST00000391918 702 ntTSL 2 BASIC18.89■□□□□ 0.61
TRIM40Q6P9F5 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC18.89■□□□□ 0.61
TRIM40Q6P9F5 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC18.89■□□□□ 0.61
TRIM40Q6P9F5 UNC93B5-201ENST00000530315 699 ntBASIC18.89■□□□□ 0.61
TRIM40Q6P9F5 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC18.89■□□□□ 0.61
TRIM40Q6P9F5 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TRIM40Q6P9F5 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC18.89■□□□□ 0.61
TRIM40Q6P9F5 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
TRIM40Q6P9F5 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
TRIM40Q6P9F5 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TRIM40Q6P9F5 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.61
TRIM40Q6P9F5 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC18.89■□□□□ 0.61
TRIM40Q6P9F5 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC18.88■□□□□ 0.61
TRIM40Q6P9F5 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC18.88■□□□□ 0.61
TRIM40Q6P9F5 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
TRIM40Q6P9F5 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TRIM40Q6P9F5 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC18.88■□□□□ 0.61
TRIM40Q6P9F5 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TRIM40Q6P9F5 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC18.88■□□□□ 0.61
TRIM40Q6P9F5 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TRIM40Q6P9F5 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TRIM40Q6P9F5 GAS7-202ENST00000396115 929 ntTSL 5 BASIC18.88■□□□□ 0.61
TRIM40Q6P9F5 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
TRIM40Q6P9F5 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC18.88■□□□□ 0.61
TRIM40Q6P9F5 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC18.88■□□□□ 0.61
TRIM40Q6P9F5 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TRIM40Q6P9F5 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC18.88■□□□□ 0.61
TRIM40Q6P9F5 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC18.88■□□□□ 0.61
TRIM40Q6P9F5 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC18.88■□□□□ 0.61
TRIM40Q6P9F5 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TRIM40Q6P9F5 AP001271.2-201ENST00000624018 1556 ntBASIC18.88■□□□□ 0.61
TRIM40Q6P9F5 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TRIM40Q6P9F5 TMEM179-206ENST00000616017 1645 ntBASIC18.88■□□□□ 0.61
TRIM40Q6P9F5 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TRIM40Q6P9F5 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC18.88■□□□□ 0.61
TRIM40Q6P9F5 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
TRIM40Q6P9F5 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC18.88■□□□□ 0.61
TRIM40Q6P9F5 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC18.88■□□□□ 0.61
TRIM40Q6P9F5 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC18.87■□□□□ 0.61
TRIM40Q6P9F5 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TRIM40Q6P9F5 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TRIM40Q6P9F5 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms