Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
PDLIM3Q53GG5 PTPA-214ENST00000423100 988 ntTSL 2 BASIC16.3■□□□□ 0.2
PDLIM3Q53GG5 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PDLIM3Q53GG5 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PDLIM3Q53GG5 AC010141.2-201ENST00000452426 721 ntBASIC16.3■□□□□ 0.2
PDLIM3Q53GG5 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC16.3■□□□□ 0.2
PDLIM3Q53GG5 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
PDLIM3Q53GG5 MMAB-206ENST00000540016 945 ntTSL 3 BASIC16.3■□□□□ 0.2
PDLIM3Q53GG5 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
PDLIM3Q53GG5 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC16.3■□□□□ 0.2
PDLIM3Q53GG5 UBE2DNL-204ENST00000602536 740 ntBASIC16.3■□□□□ 0.2
PDLIM3Q53GG5 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC16.3■□□□□ 0.2
PDLIM3Q53GG5 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PDLIM3Q53GG5 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
PDLIM3Q53GG5 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PDLIM3Q53GG5 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PDLIM3Q53GG5 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PDLIM3Q53GG5 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC16.3■□□□□ 0.2
PDLIM3Q53GG5 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PDLIM3Q53GG5 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PDLIM3Q53GG5 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC16.29■□□□□ 0.2
PDLIM3Q53GG5 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PDLIM3Q53GG5 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC16.29■□□□□ 0.2
PDLIM3Q53GG5 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PDLIM3Q53GG5 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
PDLIM3Q53GG5 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PDLIM3Q53GG5 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
PDLIM3Q53GG5 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC16.29■□□□□ 0.2
PDLIM3Q53GG5 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC16.29■□□□□ 0.2
PDLIM3Q53GG5 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC16.29■□□□□ 0.2
PDLIM3Q53GG5 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC16.29■□□□□ 0.2
PDLIM3Q53GG5 SERP1-208ENST00000491660 830 ntTSL 2 BASIC16.29■□□□□ 0.2
PDLIM3Q53GG5 BRI3-207ENST00000539286 699 ntTSL 2 BASIC16.29■□□□□ 0.2
PDLIM3Q53GG5 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC16.29■□□□□ 0.2
PDLIM3Q53GG5 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
PDLIM3Q53GG5 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PDLIM3Q53GG5 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PDLIM3Q53GG5 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PDLIM3Q53GG5 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
PDLIM3Q53GG5 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
PDLIM3Q53GG5 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PDLIM3Q53GG5 SMG8-203ENST00000578922 2178 ntBASIC16.28■□□□□ 0.2
PDLIM3Q53GG5 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
PDLIM3Q53GG5 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PDLIM3Q53GG5 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC16.28■□□□□ 0.2
PDLIM3Q53GG5 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC16.28■□□□□ 0.2
PDLIM3Q53GG5 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
PDLIM3Q53GG5 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PDLIM3Q53GG5 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PDLIM3Q53GG5 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PDLIM3Q53GG5 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC16.28■□□□□ 0.2
PDLIM3Q53GG5 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
PDLIM3Q53GG5 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC16.28■□□□□ 0.2
PDLIM3Q53GG5 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
PDLIM3Q53GG5 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
PDLIM3Q53GG5 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC16.28■□□□□ 0.2
PDLIM3Q53GG5 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
PDLIM3Q53GG5 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC16.28■□□□□ 0.2
PDLIM3Q53GG5 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC16.28■□□□□ 0.2
PDLIM3Q53GG5 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
PDLIM3Q53GG5 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
PDLIM3Q53GG5 UNC93B5-201ENST00000530315 699 ntBASIC16.28■□□□□ 0.2
PDLIM3Q53GG5 RHOD-202ENST00000532559 538 ntTSL 3 BASIC16.28■□□□□ 0.2
PDLIM3Q53GG5 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PDLIM3Q53GG5 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC16.28■□□□□ 0.2
PDLIM3Q53GG5 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
PDLIM3Q53GG5 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PDLIM3Q53GG5 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
PDLIM3Q53GG5 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PDLIM3Q53GG5 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PDLIM3Q53GG5 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
PDLIM3Q53GG5 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PDLIM3Q53GG5 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
PDLIM3Q53GG5 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC16.28■□□□□ 0.2
PDLIM3Q53GG5 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PDLIM3Q53GG5 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PDLIM3Q53GG5 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PDLIM3Q53GG5 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PDLIM3Q53GG5 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC16.28■□□□□ 0.2
PDLIM3Q53GG5 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC16.27■□□□□ 0.2
PDLIM3Q53GG5 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PDLIM3Q53GG5 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PDLIM3Q53GG5 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC16.27■□□□□ 0.2
PDLIM3Q53GG5 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC16.27■□□□□ 0.2
PDLIM3Q53GG5 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PDLIM3Q53GG5 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PDLIM3Q53GG5 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC16.27■□□□□ 0.2
PDLIM3Q53GG5 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC16.27■□□□□ 0.2
PDLIM3Q53GG5 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
PDLIM3Q53GG5 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
PDLIM3Q53GG5 NAA20-201ENST00000310450 920 ntTSL 2 BASIC16.27■□□□□ 0.2
PDLIM3Q53GG5 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
PDLIM3Q53GG5 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
PDLIM3Q53GG5 GAS7-202ENST00000396115 929 ntTSL 5 BASIC16.27■□□□□ 0.2
PDLIM3Q53GG5 APTR-203ENST00000430801 583 ntTSL 5 BASIC16.27■□□□□ 0.2
PDLIM3Q53GG5 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
PDLIM3Q53GG5 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC16.27■□□□□ 0.2
PDLIM3Q53GG5 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
PDLIM3Q53GG5 MYCNOS-205ENST00000641950 531 ntBASIC16.27■□□□□ 0.2
PDLIM3Q53GG5 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms