Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
USP41Q3LFD5 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
USP41Q3LFD5 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
USP41Q3LFD5 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
USP41Q3LFD5 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC20.99■□□□□ 0.95
USP41Q3LFD5 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
USP41Q3LFD5 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
USP41Q3LFD5 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
USP41Q3LFD5 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC20.99■□□□□ 0.95
USP41Q3LFD5 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC20.99■□□□□ 0.95
USP41Q3LFD5 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
USP41Q3LFD5 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
USP41Q3LFD5 AL390955.1-201ENST00000428694 934 ntBASIC20.99■□□□□ 0.95
USP41Q3LFD5 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC20.99■□□□□ 0.95
USP41Q3LFD5 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
USP41Q3LFD5 NAPSB-206ENST00000562112 1266 ntBASIC20.99■□□□□ 0.95
USP41Q3LFD5 AC005363.2-201ENST00000618631 242 ntBASIC20.99■□□□□ 0.95
USP41Q3LFD5 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
USP41Q3LFD5 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC20.99■□□□□ 0.95
USP41Q3LFD5 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
USP41Q3LFD5 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
USP41Q3LFD5 GOLGA6L3-201ENST00000507199 1679 ntBASIC20.99■□□□□ 0.95
USP41Q3LFD5 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
USP41Q3LFD5 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
USP41Q3LFD5 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
USP41Q3LFD5 LINC01568-207ENST00000641790 1380 ntBASIC20.98■□□□□ 0.95
USP41Q3LFD5 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
USP41Q3LFD5 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
USP41Q3LFD5 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
USP41Q3LFD5 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
USP41Q3LFD5 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
USP41Q3LFD5 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC20.98■□□□□ 0.95
USP41Q3LFD5 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
USP41Q3LFD5 RN7SL850P-201ENST00000579959 291 ntBASIC20.98■□□□□ 0.95
USP41Q3LFD5 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC20.98■□□□□ 0.95
USP41Q3LFD5 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC20.98■□□□□ 0.95
USP41Q3LFD5 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC20.98■□□□□ 0.95
USP41Q3LFD5 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
USP41Q3LFD5 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
USP41Q3LFD5 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
USP41Q3LFD5 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC20.98■□□□□ 0.95
USP41Q3LFD5 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
USP41Q3LFD5 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
USP41Q3LFD5 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC20.97■□□□□ 0.95
USP41Q3LFD5 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP41Q3LFD5 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP41Q3LFD5 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
USP41Q3LFD5 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
USP41Q3LFD5 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP41Q3LFD5 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.97■□□□□ 0.95
USP41Q3LFD5 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP41Q3LFD5 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP41Q3LFD5 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC20.97■□□□□ 0.95
USP41Q3LFD5 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC20.97■□□□□ 0.95
USP41Q3LFD5 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC20.97■□□□□ 0.95
USP41Q3LFD5 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP41Q3LFD5 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP41Q3LFD5 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP41Q3LFD5 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP41Q3LFD5 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP41Q3LFD5 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP41Q3LFD5 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP41Q3LFD5 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP41Q3LFD5 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP41Q3LFD5 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP41Q3LFD5 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
USP41Q3LFD5 SMG8-203ENST00000578922 2178 ntBASIC20.96■□□□□ 0.95
USP41Q3LFD5 CYP2D8P-201ENST00000433633 1490 ntBASIC20.96■□□□□ 0.95
USP41Q3LFD5 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
USP41Q3LFD5 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP41Q3LFD5 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP41Q3LFD5 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP41Q3LFD5 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP41Q3LFD5 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP41Q3LFD5 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
USP41Q3LFD5 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC20.96■□□□□ 0.95
USP41Q3LFD5 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
USP41Q3LFD5 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC20.96■□□□□ 0.95
USP41Q3LFD5 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
USP41Q3LFD5 GRAMD4P8-201ENST00000605465 1115 ntBASIC20.96■□□□□ 0.95
USP41Q3LFD5 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC20.96■□□□□ 0.95
USP41Q3LFD5 ABBA01031674.1-201ENST00000635145 728 ntBASIC20.96■□□□□ 0.95
USP41Q3LFD5 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC20.96■□□□□ 0.95
USP41Q3LFD5 AC092865.7-201ENST00000641832 219 ntBASIC20.96■□□□□ 0.95
USP41Q3LFD5 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP41Q3LFD5 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP41Q3LFD5 KRT18P22-201ENST00000402024 1347 ntBASIC20.96■□□□□ 0.95
USP41Q3LFD5 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
USP41Q3LFD5 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
USP41Q3LFD5 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC20.96■□□□□ 0.95
USP41Q3LFD5 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
USP41Q3LFD5 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.95
USP41Q3LFD5 PKD1P6-201ENST00000343738 4769 ntBASIC20.95■□□□□ 0.94
USP41Q3LFD5 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
USP41Q3LFD5 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
USP41Q3LFD5 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
USP41Q3LFD5 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC20.95■□□□□ 0.94
USP41Q3LFD5 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
USP41Q3LFD5 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
USP41Q3LFD5 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC20.95■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms