Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
CHD9Q3L8U1 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC21.03■□□□□ 0.96
CHD9Q3L8U1 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CHD9Q3L8U1 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
CHD9Q3L8U1 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CHD9Q3L8U1 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CHD9Q3L8U1 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CHD9Q3L8U1 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CHD9Q3L8U1 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CHD9Q3L8U1 TSPY17P-201ENST00000450329 467 ntBASIC21.03■□□□□ 0.96
CHD9Q3L8U1 GXYLT1P6-201ENST00000456472 1187 ntBASIC21.03■□□□□ 0.96
CHD9Q3L8U1 RN7SL510P-201ENST00000581311 263 ntBASIC21.03■□□□□ 0.96
CHD9Q3L8U1 NPAP1P7-201ENST00000613027 823 ntBASIC21.03■□□□□ 0.96
CHD9Q3L8U1 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CHD9Q3L8U1 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CHD9Q3L8U1 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CHD9Q3L8U1 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CHD9Q3L8U1 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CHD9Q3L8U1 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CHD9Q3L8U1 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CHD9Q3L8U1 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CHD9Q3L8U1 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC21.02■□□□□ 0.96
CHD9Q3L8U1 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
CHD9Q3L8U1 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC21.02■□□□□ 0.96
CHD9Q3L8U1 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC21.02■□□□□ 0.96
CHD9Q3L8U1 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CHD9Q3L8U1 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC21.02■□□□□ 0.96
CHD9Q3L8U1 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CHD9Q3L8U1 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC21.02■□□□□ 0.96
CHD9Q3L8U1 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CHD9Q3L8U1 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
CHD9Q3L8U1 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.95
CHD9Q3L8U1 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC21.02■□□□□ 0.95
CHD9Q3L8U1 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC21.02■□□□□ 0.95
CHD9Q3L8U1 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC21.02■□□□□ 0.95
CHD9Q3L8U1 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
CHD9Q3L8U1 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
CHD9Q3L8U1 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC21.01■□□□□ 0.95
CHD9Q3L8U1 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC21.01■□□□□ 0.95
CHD9Q3L8U1 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CHD9Q3L8U1 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CHD9Q3L8U1 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CHD9Q3L8U1 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC21.01■□□□□ 0.95
CHD9Q3L8U1 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC21.01■□□□□ 0.95
CHD9Q3L8U1 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CHD9Q3L8U1 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC21.01■□□□□ 0.95
CHD9Q3L8U1 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC21.01■□□□□ 0.95
CHD9Q3L8U1 BCL10-202ENST00000620248 774 ntTSL 5 BASIC21.01■□□□□ 0.95
CHD9Q3L8U1 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CHD9Q3L8U1 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CHD9Q3L8U1 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CHD9Q3L8U1 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CHD9Q3L8U1 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC21.01■□□□□ 0.95
CHD9Q3L8U1 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC21.01■□□□□ 0.95
CHD9Q3L8U1 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC21.01■□□□□ 0.95
CHD9Q3L8U1 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CHD9Q3L8U1 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC21.01■□□□□ 0.95
CHD9Q3L8U1 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CHD9Q3L8U1 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC21.01■□□□□ 0.95
CHD9Q3L8U1 AC018553.1-201ENST00000616682 1458 ntBASIC21.01■□□□□ 0.95
CHD9Q3L8U1 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CHD9Q3L8U1 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CHD9Q3L8U1 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CHD9Q3L8U1 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC21.01■□□□□ 0.95
CHD9Q3L8U1 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC21■□□□□ 0.95
CHD9Q3L8U1 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
CHD9Q3L8U1 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CHD9Q3L8U1 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC21■□□□□ 0.95
CHD9Q3L8U1 PRSS44-201ENST00000515154 1146 ntBASIC21■□□□□ 0.95
CHD9Q3L8U1 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC21■□□□□ 0.95
CHD9Q3L8U1 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC21■□□□□ 0.95
CHD9Q3L8U1 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC21■□□□□ 0.95
CHD9Q3L8U1 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CHD9Q3L8U1 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
CHD9Q3L8U1 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
CHD9Q3L8U1 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC21■□□□□ 0.95
CHD9Q3L8U1 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
CHD9Q3L8U1 SNX5-210ENST00000481323 562 ntTSL 3 BASIC21■□□□□ 0.95
CHD9Q3L8U1 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC21■□□□□ 0.95
CHD9Q3L8U1 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC21■□□□□ 0.95
CHD9Q3L8U1 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
CHD9Q3L8U1 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CHD9Q3L8U1 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CHD9Q3L8U1 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC20.99■□□□□ 0.95
CHD9Q3L8U1 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CHD9Q3L8U1 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
CHD9Q3L8U1 SKP2-204ENST00000508514 821 ntTSL 3 BASIC20.99■□□□□ 0.95
CHD9Q3L8U1 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC20.99■□□□□ 0.95
CHD9Q3L8U1 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
CHD9Q3L8U1 GUSBP5-202ENST00000510805 1989 ntBASIC20.99■□□□□ 0.95
CHD9Q3L8U1 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CHD9Q3L8U1 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CHD9Q3L8U1 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC20.99■□□□□ 0.95
CHD9Q3L8U1 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CHD9Q3L8U1 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CHD9Q3L8U1 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CHD9Q3L8U1 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC20.99■□□□□ 0.95
CHD9Q3L8U1 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CHD9Q3L8U1 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CHD9Q3L8U1 AC011298.2-201ENST00000617989 482 ntBASIC20.99■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms