Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
HDAC4P56524 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC20.6■□□□□ 0.89
HDAC4P56524 ABHD17AP6-201ENST00000458502 1044 ntBASIC20.6■□□□□ 0.89
HDAC4P56524 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC20.6■□□□□ 0.89
HDAC4P56524 AC008687.6-201ENST00000596318 630 ntBASIC20.6■□□□□ 0.89
HDAC4P56524 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HDAC4P56524 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
HDAC4P56524 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
HDAC4P56524 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
HDAC4P56524 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HDAC4P56524 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC20.6■□□□□ 0.89
HDAC4P56524 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
HDAC4P56524 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC20.6■□□□□ 0.89
HDAC4P56524 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC20.6■□□□□ 0.89
HDAC4P56524 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC20.6■□□□□ 0.89
HDAC4P56524 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC20.6■□□□□ 0.89
HDAC4P56524 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HDAC4P56524 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HDAC4P56524 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HDAC4P56524 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC20.59■□□□□ 0.89
HDAC4P56524 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC20.59■□□□□ 0.89
HDAC4P56524 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC20.59■□□□□ 0.89
HDAC4P56524 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HDAC4P56524 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
HDAC4P56524 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
HDAC4P56524 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HDAC4P56524 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HDAC4P56524 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HDAC4P56524 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
HDAC4P56524 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HDAC4P56524 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
HDAC4P56524 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
HDAC4P56524 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
HDAC4P56524 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC20.59■□□□□ 0.89
HDAC4P56524 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC20.59■□□□□ 0.89
HDAC4P56524 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC20.59■□□□□ 0.89
HDAC4P56524 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC20.59■□□□□ 0.89
HDAC4P56524 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC20.59■□□□□ 0.89
HDAC4P56524 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
HDAC4P56524 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.59■□□□□ 0.89
HDAC4P56524 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
HDAC4P56524 TFP1-202ENST00000475455 1573 ntBASIC20.59■□□□□ 0.89
HDAC4P56524 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HDAC4P56524 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HDAC4P56524 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
HDAC4P56524 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
HDAC4P56524 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
HDAC4P56524 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
HDAC4P56524 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
HDAC4P56524 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC20.58■□□□□ 0.89
HDAC4P56524 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
HDAC4P56524 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC20.58■□□□□ 0.89
HDAC4P56524 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC20.58■□□□□ 0.89
HDAC4P56524 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
HDAC4P56524 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
HDAC4P56524 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC20.58■□□□□ 0.89
HDAC4P56524 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC20.58■□□□□ 0.89
HDAC4P56524 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
HDAC4P56524 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
HDAC4P56524 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
HDAC4P56524 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
HDAC4P56524 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
HDAC4P56524 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC20.58■□□□□ 0.88
HDAC4P56524 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
HDAC4P56524 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC20.58■□□□□ 0.88
HDAC4P56524 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
HDAC4P56524 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
HDAC4P56524 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
HDAC4P56524 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
HDAC4P56524 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
HDAC4P56524 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
HDAC4P56524 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC20.57■□□□□ 0.88
HDAC4P56524 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
HDAC4P56524 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
HDAC4P56524 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HDAC4P56524 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
HDAC4P56524 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HDAC4P56524 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC20.57■□□□□ 0.88
HDAC4P56524 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
HDAC4P56524 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HDAC4P56524 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC20.57■□□□□ 0.88
HDAC4P56524 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HDAC4P56524 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC20.57■□□□□ 0.88
HDAC4P56524 TBCB-214ENST00000629269 413 ntTSL 5 BASIC20.57■□□□□ 0.88
HDAC4P56524 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HDAC4P56524 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC20.57■□□□□ 0.88
HDAC4P56524 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC20.57■□□□□ 0.88
HDAC4P56524 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC20.57■□□□□ 0.88
HDAC4P56524 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
HDAC4P56524 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
HDAC4P56524 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HDAC4P56524 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HDAC4P56524 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HDAC4P56524 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HDAC4P56524 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
HDAC4P56524 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
HDAC4P56524 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HDAC4P56524 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC20.56■□□□□ 0.88
HDAC4P56524 AL158211.5-201ENST00000623583 2518 ntBASIC20.56■□□□□ 0.88
HDAC4P56524 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms