Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
FOXA3P55318 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA3P55318 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA3P55318 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA3P55318 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC14.78□□□□□ -0.04
FOXA3P55318 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
FOXA3P55318 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA3P55318 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA3P55318 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC14.78□□□□□ -0.04
FOXA3P55318 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA3P55318 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA3P55318 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA3P55318 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC14.78□□□□□ -0.04
FOXA3P55318 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC14.78□□□□□ -0.04
FOXA3P55318 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
FOXA3P55318 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
FOXA3P55318 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
FOXA3P55318 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
FOXA3P55318 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
FOXA3P55318 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
FOXA3P55318 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC14.77□□□□□ -0.04
FOXA3P55318 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
FOXA3P55318 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC14.77□□□□□ -0.04
FOXA3P55318 KRT16P2-201ENST00000414673 1423 ntBASIC14.77□□□□□ -0.04
FOXA3P55318 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
FOXA3P55318 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.04
FOXA3P55318 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
FOXA3P55318 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC14.77□□□□□ -0.04
FOXA3P55318 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
FOXA3P55318 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
FOXA3P55318 CROCCP3-202ENST00000420820 1947 ntBASIC14.77□□□□□ -0.04
FOXA3P55318 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
FOXA3P55318 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
FOXA3P55318 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
FOXA3P55318 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC14.77□□□□□ -0.05
FOXA3P55318 MOK-225ENST00000522867 1883 ntTSL 5 BASIC14.77□□□□□ -0.05
FOXA3P55318 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
FOXA3P55318 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
FOXA3P55318 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC14.77□□□□□ -0.05
FOXA3P55318 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
FOXA3P55318 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
FOXA3P55318 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC14.77□□□□□ -0.05
FOXA3P55318 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC14.77□□□□□ -0.05
FOXA3P55318 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC14.77□□□□□ -0.05
FOXA3P55318 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
FOXA3P55318 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
FOXA3P55318 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.05
FOXA3P55318 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
FOXA3P55318 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
FOXA3P55318 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
FOXA3P55318 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC14.77□□□□□ -0.05
FOXA3P55318 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
FOXA3P55318 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
FOXA3P55318 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
FOXA3P55318 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
FOXA3P55318 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
FOXA3P55318 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
FOXA3P55318 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
FOXA3P55318 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
FOXA3P55318 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC14.76□□□□□ -0.05
FOXA3P55318 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
FOXA3P55318 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
FOXA3P55318 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
FOXA3P55318 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
FOXA3P55318 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
FOXA3P55318 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
FOXA3P55318 LHPP-203ENST00000392757 840 ntTSL 3 BASIC14.76□□□□□ -0.05
FOXA3P55318 IGHV3-19-201ENST00000521488 291 ntBASIC14.76□□□□□ -0.05
FOXA3P55318 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC14.76□□□□□ -0.05
FOXA3P55318 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
FOXA3P55318 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC14.76□□□□□ -0.05
FOXA3P55318 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
FOXA3P55318 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
FOXA3P55318 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
FOXA3P55318 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
FOXA3P55318 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC14.76□□□□□ -0.05
FOXA3P55318 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
FOXA3P55318 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC14.76□□□□□ -0.05
FOXA3P55318 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC14.76□□□□□ -0.05
FOXA3P55318 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
FOXA3P55318 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
FOXA3P55318 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC14.76□□□□□ -0.05
FOXA3P55318 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
FOXA3P55318 AC104581.1-202ENST00000635932 2618 ntBASIC14.76□□□□□ -0.05
FOXA3P55318 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
FOXA3P55318 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC14.75□□□□□ -0.05
FOXA3P55318 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
FOXA3P55318 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
FOXA3P55318 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC14.75□□□□□ -0.05
FOXA3P55318 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
FOXA3P55318 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC14.75□□□□□ -0.05
FOXA3P55318 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
FOXA3P55318 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC14.75□□□□□ -0.05
FOXA3P55318 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
FOXA3P55318 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
FOXA3P55318 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC14.75□□□□□ -0.05
FOXA3P55318 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
FOXA3P55318 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
FOXA3P55318 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
FOXA3P55318 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC14.75□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms