Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
CIITAP33076 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC22.28■■□□□ 1.16
CIITAP33076 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC22.28■■□□□ 1.16
CIITAP33076 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CIITAP33076 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CIITAP33076 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.16
CIITAP33076 AC112907.3-201ENST00000577781 2400 ntBASIC22.27■■□□□ 1.16
CIITAP33076 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CIITAP33076 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC22.27■■□□□ 1.16
CIITAP33076 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
CIITAP33076 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CIITAP33076 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CIITAP33076 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC22.27■■□□□ 1.16
CIITAP33076 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CIITAP33076 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC22.27■■□□□ 1.16
CIITAP33076 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC22.27■■□□□ 1.16
CIITAP33076 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC22.27■■□□□ 1.16
CIITAP33076 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC22.27■■□□□ 1.16
CIITAP33076 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC22.27■■□□□ 1.16
CIITAP33076 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CIITAP33076 Z99916.2-201ENST00000604037 246 ntBASIC22.27■■□□□ 1.16
CIITAP33076 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC22.27■■□□□ 1.16
CIITAP33076 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC22.27■■□□□ 1.16
CIITAP33076 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC22.27■■□□□ 1.16
CIITAP33076 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CIITAP33076 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC22.27■■□□□ 1.16
CIITAP33076 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC22.27■■□□□ 1.15
CIITAP33076 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC22.27■■□□□ 1.15
CIITAP33076 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
CIITAP33076 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CIITAP33076 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CIITAP33076 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC22.26■■□□□ 1.15
CIITAP33076 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CIITAP33076 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
CIITAP33076 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC22.26■■□□□ 1.15
CIITAP33076 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CIITAP33076 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC22.26■■□□□ 1.15
CIITAP33076 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC22.26■■□□□ 1.15
CIITAP33076 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CIITAP33076 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC22.26■■□□□ 1.15
CIITAP33076 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CIITAP33076 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
CIITAP33076 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC22.26■■□□□ 1.15
CIITAP33076 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
CIITAP33076 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CIITAP33076 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
CIITAP33076 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC22.26■■□□□ 1.15
CIITAP33076 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
CIITAP33076 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
CIITAP33076 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC22.25■■□□□ 1.15
CIITAP33076 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
CIITAP33076 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC22.25■■□□□ 1.15
CIITAP33076 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC22.25■■□□□ 1.15
CIITAP33076 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC22.25■■□□□ 1.15
CIITAP33076 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CIITAP33076 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC22.25■■□□□ 1.15
CIITAP33076 AC012618.2-201ENST00000428058 849 ntBASIC22.25■■□□□ 1.15
CIITAP33076 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC22.25■■□□□ 1.15
CIITAP33076 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC22.25■■□□□ 1.15
CIITAP33076 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
CIITAP33076 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC22.25■■□□□ 1.15
CIITAP33076 AC233702.5-201ENST00000584107 538 ntBASIC22.25■■□□□ 1.15
CIITAP33076 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC22.25■■□□□ 1.15
CIITAP33076 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
CIITAP33076 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
CIITAP33076 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC22.25■■□□□ 1.15
CIITAP33076 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
CIITAP33076 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
CIITAP33076 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
CIITAP33076 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC22.25■■□□□ 1.15
CIITAP33076 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC22.25■■□□□ 1.15
CIITAP33076 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CIITAP33076 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC22.24■■□□□ 1.15
CIITAP33076 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
CIITAP33076 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC22.24■■□□□ 1.15
CIITAP33076 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC22.24■■□□□ 1.15
CIITAP33076 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC22.24■■□□□ 1.15
CIITAP33076 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CIITAP33076 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
CIITAP33076 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC22.24■■□□□ 1.15
CIITAP33076 RPS2P55-201ENST00000397318 883 ntBASIC22.24■■□□□ 1.15
CIITAP33076 TUBB8P6-201ENST00000436895 1288 ntBASIC22.24■■□□□ 1.15
CIITAP33076 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC22.24■■□□□ 1.15
CIITAP33076 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
CIITAP33076 AC107956.1-201ENST00000494359 873 ntBASIC22.24■■□□□ 1.15
CIITAP33076 AC093827.2-201ENST00000512654 315 ntBASIC22.24■■□□□ 1.15
CIITAP33076 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC22.24■■□□□ 1.15
CIITAP33076 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC22.24■■□□□ 1.15
CIITAP33076 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
CIITAP33076 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC22.24■■□□□ 1.15
CIITAP33076 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC22.24■■□□□ 1.15
CIITAP33076 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
CIITAP33076 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CIITAP33076 HTR7P1-201ENST00000538670 1336 ntBASIC22.24■■□□□ 1.15
CIITAP33076 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC22.24■■□□□ 1.15
CIITAP33076 LBX2-AS1-202ENST00000603175 2083 ntBASIC22.24■■□□□ 1.15
CIITAP33076 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC22.24■■□□□ 1.15
CIITAP33076 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CIITAP33076 AL135905.2-201ENST00000584934 1404 ntBASIC22.23■■□□□ 1.15
CIITAP33076 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms