Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VIMP08670 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC19.77■□□□□ 0.76
VIMP08670 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
VIMP08670 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
VIMP08670 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC19.77■□□□□ 0.76
VIMP08670 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
VIMP08670 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC19.77■□□□□ 0.76
VIMP08670 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
VIMP08670 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
VIMP08670 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC19.77■□□□□ 0.76
VIMP08670 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC19.77■□□□□ 0.76
VIMP08670 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VIMP08670 PTPA-214ENST00000423100 988 ntTSL 2 BASIC19.77■□□□□ 0.76
VIMP08670 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC19.77■□□□□ 0.76
VIMP08670 IGHV3-19-201ENST00000521488 291 ntBASIC19.77■□□□□ 0.76
VIMP08670 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
VIMP08670 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
VIMP08670 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VIMP08670 AC009113.1-201ENST00000570267 2443 ntBASIC19.77■□□□□ 0.76
VIMP08670 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
VIMP08670 AC009237.14-201ENST00000609975 1594 ntBASIC19.77■□□□□ 0.76
VIMP08670 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
VIMP08670 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VIMP08670 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
VIMP08670 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.75
VIMP08670 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
VIMP08670 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VIMP08670 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VIMP08670 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VIMP08670 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
VIMP08670 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VIMP08670 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VIMP08670 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC19.76■□□□□ 0.75
VIMP08670 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VIMP08670 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC19.76■□□□□ 0.75
VIMP08670 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC19.76■□□□□ 0.75
VIMP08670 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC19.76■□□□□ 0.75
VIMP08670 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VIMP08670 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC19.76■□□□□ 0.75
VIMP08670 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC19.76■□□□□ 0.75
VIMP08670 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VIMP08670 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
VIMP08670 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC19.76■□□□□ 0.75
VIMP08670 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
VIMP08670 AC079598.2-202ENST00000546624 1451 ntBASIC19.76■□□□□ 0.75
VIMP08670 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VIMP08670 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
VIMP08670 LHPP-203ENST00000392757 840 ntTSL 3 BASIC19.76■□□□□ 0.75
VIMP08670 PTMA-205ENST00000410064 814 ntTSL 2 BASIC19.76■□□□□ 0.75
VIMP08670 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
VIMP08670 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VIMP08670 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
VIMP08670 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC19.76■□□□□ 0.75
VIMP08670 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VIMP08670 AL390961.4-201ENST00000623958 2535 ntBASIC19.76■□□□□ 0.75
VIMP08670 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
VIMP08670 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
VIMP08670 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VIMP08670 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VIMP08670 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VIMP08670 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
VIMP08670 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
VIMP08670 WAC-202ENST00000347934 2839 ntTSL 5 BASIC19.75■□□□□ 0.75
VIMP08670 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VIMP08670 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
VIMP08670 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VIMP08670 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VIMP08670 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VIMP08670 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC19.75■□□□□ 0.75
VIMP08670 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VIMP08670 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VIMP08670 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
VIMP08670 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
VIMP08670 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
VIMP08670 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC19.75■□□□□ 0.75
VIMP08670 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC19.75■□□□□ 0.75
VIMP08670 SRR-208ENST00000576848 588 ntTSL 4 BASIC19.75■□□□□ 0.75
VIMP08670 TRIR-202ENST00000588213 841 ntTSL 3 BASIC19.75■□□□□ 0.75
VIMP08670 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VIMP08670 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
VIMP08670 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC19.75■□□□□ 0.75
VIMP08670 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VIMP08670 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
VIMP08670 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VIMP08670 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
VIMP08670 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
VIMP08670 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VIMP08670 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
VIMP08670 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VIMP08670 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC19.74■□□□□ 0.75
VIMP08670 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VIMP08670 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
VIMP08670 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
VIMP08670 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VIMP08670 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC19.74■□□□□ 0.75
VIMP08670 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC19.74■□□□□ 0.75
VIMP08670 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC19.74■□□□□ 0.75
VIMP08670 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VIMP08670 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC19.74■□□□□ 0.75
VIMP08670 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms