Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TNFP01375 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC19.29■□□□□ 0.68
TNFP01375 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC19.29■□□□□ 0.68
TNFP01375 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC19.29■□□□□ 0.68
TNFP01375 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC19.29■□□□□ 0.68
TNFP01375 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TNFP01375 REXO1L10P-201ENST00000615707 1290 ntBASIC19.29■□□□□ 0.68
TNFP01375 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC19.29■□□□□ 0.68
TNFP01375 AL031985.4-201ENST00000642138 673 ntBASIC19.29■□□□□ 0.68
TNFP01375 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TNFP01375 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TNFP01375 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TNFP01375 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
TNFP01375 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
TNFP01375 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC19.28■□□□□ 0.68
TNFP01375 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TNFP01375 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
TNFP01375 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TNFP01375 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TNFP01375 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC19.28■□□□□ 0.68
TNFP01375 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TNFP01375 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC19.28■□□□□ 0.68
TNFP01375 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC19.28■□□□□ 0.68
TNFP01375 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TNFP01375 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC19.28■□□□□ 0.68
TNFP01375 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
TNFP01375 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC19.28■□□□□ 0.68
TNFP01375 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TNFP01375 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
TNFP01375 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
TNFP01375 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC19.27■□□□□ 0.68
TNFP01375 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TNFP01375 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC19.27■□□□□ 0.68
TNFP01375 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TNFP01375 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
TNFP01375 DET1-207ENST00000564406 2315 ntTSL 2 BASIC19.27■□□□□ 0.68
TNFP01375 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC19.27■□□□□ 0.68
TNFP01375 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
TNFP01375 RBM17P1-201ENST00000453646 1190 ntBASIC19.27■□□□□ 0.68
TNFP01375 AC116562.2-201ENST00000507042 360 ntBASIC19.27■□□□□ 0.68
TNFP01375 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC19.27■□□□□ 0.68
TNFP01375 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC19.27■□□□□ 0.68
TNFP01375 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC19.27■□□□□ 0.68
TNFP01375 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC19.27■□□□□ 0.68
TNFP01375 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TNFP01375 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
TNFP01375 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.67
TNFP01375 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC19.27■□□□□ 0.67
TNFP01375 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TNFP01375 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TNFP01375 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TNFP01375 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19.26■□□□□ 0.67
TNFP01375 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC19.26■□□□□ 0.67
TNFP01375 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
TNFP01375 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TNFP01375 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC19.26■□□□□ 0.67
TNFP01375 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
TNFP01375 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TNFP01375 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
TNFP01375 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
TNFP01375 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC19.26■□□□□ 0.67
TNFP01375 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC19.26■□□□□ 0.67
TNFP01375 AL445675.2-201ENST00000620291 557 ntBASIC19.26■□□□□ 0.67
TNFP01375 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC19.26■□□□□ 0.67
TNFP01375 AP001271.2-201ENST00000624018 1556 ntBASIC19.26■□□□□ 0.67
TNFP01375 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TNFP01375 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.26■□□□□ 0.67
TNFP01375 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
TNFP01375 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TNFP01375 AC073314.1-201ENST00000568729 2216 ntBASIC19.25■□□□□ 0.67
TNFP01375 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC19.25■□□□□ 0.67
TNFP01375 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TNFP01375 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TNFP01375 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
TNFP01375 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TNFP01375 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
TNFP01375 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TNFP01375 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC19.25■□□□□ 0.67
TNFP01375 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC19.25■□□□□ 0.67
TNFP01375 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC19.25■□□□□ 0.67
TNFP01375 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TNFP01375 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC19.25■□□□□ 0.67
TNFP01375 AC131212.4-201ENST00000623606 975 ntBASIC19.25■□□□□ 0.67
TNFP01375 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TNFP01375 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TNFP01375 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.25■□□□□ 0.67
TNFP01375 GOLGA2P11-201ENST00000562660 1621 ntBASIC19.25■□□□□ 0.67
TNFP01375 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TNFP01375 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
TNFP01375 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
TNFP01375 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TNFP01375 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
TNFP01375 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC19.24■□□□□ 0.67
TNFP01375 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TNFP01375 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TNFP01375 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TNFP01375 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC19.24■□□□□ 0.67
TNFP01375 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
TNFP01375 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC19.24■□□□□ 0.67
TNFP01375 PPP1R14BP5-201ENST00000440334 435 ntBASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms