Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC18.88■□□□□ 0.61
SEMA3DO95025 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SEMA3DO95025 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC18.88■□□□□ 0.61
SEMA3DO95025 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SEMA3DO95025 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC18.88■□□□□ 0.61
SEMA3DO95025 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SEMA3DO95025 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SEMA3DO95025 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SEMA3DO95025 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC18.88■□□□□ 0.61
SEMA3DO95025 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SEMA3DO95025 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SEMA3DO95025 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC18.87■□□□□ 0.61
SEMA3DO95025 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC18.87■□□□□ 0.61
SEMA3DO95025 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SEMA3DO95025 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC18.87■□□□□ 0.61
SEMA3DO95025 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC18.87■□□□□ 0.61
SEMA3DO95025 GATS-209ENST00000454084 1030 ntTSL 3 BASIC18.87■□□□□ 0.61
SEMA3DO95025 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC18.87■□□□□ 0.61
SEMA3DO95025 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC18.87■□□□□ 0.61
SEMA3DO95025 AC098934.4-201ENST00000564127 592 ntBASIC18.87■□□□□ 0.61
SEMA3DO95025 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
SEMA3DO95025 AC060766.5-201ENST00000590539 871 ntBASIC18.87■□□□□ 0.61
SEMA3DO95025 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC18.87■□□□□ 0.61
SEMA3DO95025 AC083880.1-201ENST00000608266 535 ntBASIC18.87■□□□□ 0.61
SEMA3DO95025 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC18.87■□□□□ 0.61
SEMA3DO95025 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SEMA3DO95025 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC18.86■□□□□ 0.61
SEMA3DO95025 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC18.86■□□□□ 0.61
SEMA3DO95025 AL020996.1-203ENST00000536896 2307 ntBASIC18.86■□□□□ 0.61
SEMA3DO95025 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
SEMA3DO95025 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SEMA3DO95025 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
SEMA3DO95025 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC18.86■□□□□ 0.61
SEMA3DO95025 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
SEMA3DO95025 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SEMA3DO95025 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC18.86■□□□□ 0.61
SEMA3DO95025 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC18.86■□□□□ 0.61
SEMA3DO95025 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SEMA3DO95025 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SEMA3DO95025 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC18.86■□□□□ 0.61
SEMA3DO95025 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SEMA3DO95025 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SEMA3DO95025 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
SEMA3DO95025 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SEMA3DO95025 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SEMA3DO95025 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SEMA3DO95025 CALM3-202ENST00000391918 702 ntTSL 2 BASIC18.86■□□□□ 0.61
SEMA3DO95025 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
SEMA3DO95025 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SEMA3DO95025 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC18.86■□□□□ 0.61
SEMA3DO95025 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC18.86■□□□□ 0.61
SEMA3DO95025 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
SEMA3DO95025 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SEMA3DO95025 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SEMA3DO95025 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
SEMA3DO95025 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SEMA3DO95025 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC18.86■□□□□ 0.61
SEMA3DO95025 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC18.86■□□□□ 0.61
SEMA3DO95025 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SEMA3DO95025 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SEMA3DO95025 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC18.85■□□□□ 0.61
SEMA3DO95025 AC092368.3-202ENST00000574180 1591 ntBASIC18.85■□□□□ 0.61
SEMA3DO95025 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC18.85■□□□□ 0.61
SEMA3DO95025 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SEMA3DO95025 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SEMA3DO95025 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SEMA3DO95025 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
SEMA3DO95025 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
SEMA3DO95025 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
SEMA3DO95025 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SEMA3DO95025 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC18.85■□□□□ 0.61
SEMA3DO95025 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC18.85■□□□□ 0.61
SEMA3DO95025 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SEMA3DO95025 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
SEMA3DO95025 MAX-217ENST00000557277 728 ntTSL 3 BASIC18.85■□□□□ 0.61
SEMA3DO95025 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC18.85■□□□□ 0.61
SEMA3DO95025 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
SEMA3DO95025 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SEMA3DO95025 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC18.85■□□□□ 0.61
SEMA3DO95025 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SEMA3DO95025 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SEMA3DO95025 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SEMA3DO95025 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
SEMA3DO95025 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SEMA3DO95025 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC18.85■□□□□ 0.61
SEMA3DO95025 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC18.85■□□□□ 0.61
SEMA3DO95025 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
SEMA3DO95025 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
SEMA3DO95025 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SEMA3DO95025 AC018553.1-201ENST00000616682 1458 ntBASIC18.84■□□□□ 0.61
SEMA3DO95025 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC18.84■□□□□ 0.61
SEMA3DO95025 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC18.84■□□□□ 0.61
SEMA3DO95025 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SEMA3DO95025 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
SEMA3DO95025 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC18.84■□□□□ 0.61
SEMA3DO95025 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SEMA3DO95025 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SEMA3DO95025 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SEMA3DO95025 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SEMA3DO95025 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms