Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HMGN4O00479 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HMGN4O00479 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HMGN4O00479 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HMGN4O00479 DUSP5P2-201ENST00000426873 1033 ntBASIC18.34■□□□□ 0.53
HMGN4O00479 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC18.34■□□□□ 0.53
HMGN4O00479 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC18.34■□□□□ 0.53
HMGN4O00479 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
HMGN4O00479 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
HMGN4O00479 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC18.34■□□□□ 0.53
HMGN4O00479 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC18.34■□□□□ 0.53
HMGN4O00479 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
HMGN4O00479 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC18.34■□□□□ 0.53
HMGN4O00479 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
HMGN4O00479 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
HMGN4O00479 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
HMGN4O00479 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC18.33■□□□□ 0.53
HMGN4O00479 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
HMGN4O00479 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC18.33■□□□□ 0.53
HMGN4O00479 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
HMGN4O00479 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC18.33■□□□□ 0.53
HMGN4O00479 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
HMGN4O00479 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
HMGN4O00479 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
HMGN4O00479 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
HMGN4O00479 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
HMGN4O00479 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
HMGN4O00479 BX323043.1-201ENST00000641006 1765 ntBASIC18.33■□□□□ 0.53
HMGN4O00479 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
HMGN4O00479 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HMGN4O00479 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HMGN4O00479 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HMGN4O00479 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
HMGN4O00479 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HMGN4O00479 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
HMGN4O00479 AC073210.2-201ENST00000430369 194 ntBASIC18.33■□□□□ 0.52
HMGN4O00479 GUSBP6-202ENST00000438529 1198 ntBASIC18.33■□□□□ 0.52
HMGN4O00479 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
HMGN4O00479 HES2-206ENST00000489730 730 ntTSL 2 BASIC18.33■□□□□ 0.52
HMGN4O00479 PPP1R14BP3-201ENST00000509033 445 ntBASIC18.33■□□□□ 0.52
HMGN4O00479 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC18.33■□□□□ 0.52
HMGN4O00479 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HMGN4O00479 AC005829.2-201ENST00000571422 1056 ntBASIC18.33■□□□□ 0.52
HMGN4O00479 AC092118.2-201ENST00000613495 667 ntBASIC18.33■□□□□ 0.52
HMGN4O00479 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HMGN4O00479 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
HMGN4O00479 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC18.33■□□□□ 0.52
HMGN4O00479 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC18.33■□□□□ 0.52
HMGN4O00479 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HMGN4O00479 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC18.33■□□□□ 0.52
HMGN4O00479 AC098818.2-201ENST00000564925 2320 ntBASIC18.33■□□□□ 0.52
HMGN4O00479 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC18.33■□□□□ 0.52
HMGN4O00479 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
HMGN4O00479 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
HMGN4O00479 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HMGN4O00479 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
HMGN4O00479 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC18.32■□□□□ 0.52
HMGN4O00479 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HMGN4O00479 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
HMGN4O00479 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
HMGN4O00479 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
HMGN4O00479 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
HMGN4O00479 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC18.32■□□□□ 0.52
HMGN4O00479 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HMGN4O00479 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HMGN4O00479 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
HMGN4O00479 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HMGN4O00479 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC18.32■□□□□ 0.52
HMGN4O00479 AL390719.1-204ENST00000412397 1219 ntBASIC18.32■□□□□ 0.52
HMGN4O00479 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
HMGN4O00479 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
HMGN4O00479 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
HMGN4O00479 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC18.31■□□□□ 0.52
HMGN4O00479 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
HMGN4O00479 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
HMGN4O00479 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC18.31■□□□□ 0.52
HMGN4O00479 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC18.31■□□□□ 0.52
HMGN4O00479 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
HMGN4O00479 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC18.31■□□□□ 0.52
HMGN4O00479 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HMGN4O00479 CALM3-202ENST00000391918 702 ntTSL 2 BASIC18.31■□□□□ 0.52
HMGN4O00479 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC18.31■□□□□ 0.52
HMGN4O00479 NCF1B-203ENST00000435988 1254 ntBASIC18.31■□□□□ 0.52
HMGN4O00479 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC18.31■□□□□ 0.52
HMGN4O00479 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC18.31■□□□□ 0.52
HMGN4O00479 AC091874.3-201ENST00000512672 1195 ntBASIC18.31■□□□□ 0.52
HMGN4O00479 WT1-AS_3.1-201ENST00000613262 234 ntBASIC18.31■□□□□ 0.52
HMGN4O00479 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
HMGN4O00479 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC18.31■□□□□ 0.52
HMGN4O00479 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HMGN4O00479 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HMGN4O00479 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
HMGN4O00479 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC18.31■□□□□ 0.52
HMGN4O00479 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
HMGN4O00479 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC18.31■□□□□ 0.52
HMGN4O00479 AL032819.2-201ENST00000624543 2162 ntBASIC18.31■□□□□ 0.52
HMGN4O00479 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
HMGN4O00479 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC18.31■□□□□ 0.52
HMGN4O00479 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HMGN4O00479 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms