Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
TMX2-CTNND1H3BSU7 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC19.35■□□□□ 0.69
TMX2-CTNND1H3BSU7 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
TMX2-CTNND1H3BSU7 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
TMX2-CTNND1H3BSU7 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
TMX2-CTNND1H3BSU7 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TMX2-CTNND1H3BSU7 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
TMX2-CTNND1H3BSU7 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
TMX2-CTNND1H3BSU7 MIR1224-201ENST00000408193 85 ntBASIC19.35■□□□□ 0.69
TMX2-CTNND1H3BSU7 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC19.35■□□□□ 0.69
TMX2-CTNND1H3BSU7 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC19.35■□□□□ 0.69
TMX2-CTNND1H3BSU7 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC19.35■□□□□ 0.69
TMX2-CTNND1H3BSU7 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC19.35■□□□□ 0.69
TMX2-CTNND1H3BSU7 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC19.35■□□□□ 0.69
TMX2-CTNND1H3BSU7 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC19.35■□□□□ 0.69
TMX2-CTNND1H3BSU7 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC19.35■□□□□ 0.69
TMX2-CTNND1H3BSU7 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
TMX2-CTNND1H3BSU7 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TMX2-CTNND1H3BSU7 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TMX2-CTNND1H3BSU7 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TMX2-CTNND1H3BSU7 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC19.35■□□□□ 0.69
TMX2-CTNND1H3BSU7 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC19.35■□□□□ 0.69
TMX2-CTNND1H3BSU7 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TMX2-CTNND1H3BSU7 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TMX2-CTNND1H3BSU7 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
TMX2-CTNND1H3BSU7 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC19.34■□□□□ 0.69
TMX2-CTNND1H3BSU7 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TMX2-CTNND1H3BSU7 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
TMX2-CTNND1H3BSU7 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TMX2-CTNND1H3BSU7 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TMX2-CTNND1H3BSU7 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
TMX2-CTNND1H3BSU7 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
TMX2-CTNND1H3BSU7 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TMX2-CTNND1H3BSU7 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
TMX2-CTNND1H3BSU7 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC19.34■□□□□ 0.69
TMX2-CTNND1H3BSU7 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC19.34■□□□□ 0.69
TMX2-CTNND1H3BSU7 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC19.34■□□□□ 0.69
TMX2-CTNND1H3BSU7 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC19.34■□□□□ 0.69
TMX2-CTNND1H3BSU7 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
TMX2-CTNND1H3BSU7 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC19.34■□□□□ 0.69
TMX2-CTNND1H3BSU7 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC19.34■□□□□ 0.69
TMX2-CTNND1H3BSU7 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
TMX2-CTNND1H3BSU7 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TMX2-CTNND1H3BSU7 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
TMX2-CTNND1H3BSU7 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TMX2-CTNND1H3BSU7 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TMX2-CTNND1H3BSU7 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TMX2-CTNND1H3BSU7 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TMX2-CTNND1H3BSU7 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
TMX2-CTNND1H3BSU7 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
TMX2-CTNND1H3BSU7 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TMX2-CTNND1H3BSU7 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC19.34■□□□□ 0.69
TMX2-CTNND1H3BSU7 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TMX2-CTNND1H3BSU7 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
TMX2-CTNND1H3BSU7 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
TMX2-CTNND1H3BSU7 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
TMX2-CTNND1H3BSU7 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
TMX2-CTNND1H3BSU7 PARN-205ENST00000539279 1557 ntTSL 2 BASIC19.33■□□□□ 0.69
TMX2-CTNND1H3BSU7 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC19.33■□□□□ 0.68
TMX2-CTNND1H3BSU7 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TMX2-CTNND1H3BSU7 KRT16P5-201ENST00000455284 522 ntBASIC19.33■□□□□ 0.68
TMX2-CTNND1H3BSU7 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC19.33■□□□□ 0.68
TMX2-CTNND1H3BSU7 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC19.33■□□□□ 0.68
TMX2-CTNND1H3BSU7 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
TMX2-CTNND1H3BSU7 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC19.33■□□□□ 0.68
TMX2-CTNND1H3BSU7 SNX21-213ENST00000614929 587 ntTSL 5 BASIC19.33■□□□□ 0.68
TMX2-CTNND1H3BSU7 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
TMX2-CTNND1H3BSU7 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC19.33■□□□□ 0.68
TMX2-CTNND1H3BSU7 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
TMX2-CTNND1H3BSU7 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC19.33■□□□□ 0.68
TMX2-CTNND1H3BSU7 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TMX2-CTNND1H3BSU7 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TMX2-CTNND1H3BSU7 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
TMX2-CTNND1H3BSU7 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
TMX2-CTNND1H3BSU7 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC19.33■□□□□ 0.68
TMX2-CTNND1H3BSU7 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC19.32■□□□□ 0.68
TMX2-CTNND1H3BSU7 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TMX2-CTNND1H3BSU7 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC19.32■□□□□ 0.68
TMX2-CTNND1H3BSU7 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TMX2-CTNND1H3BSU7 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TMX2-CTNND1H3BSU7 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TMX2-CTNND1H3BSU7 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TMX2-CTNND1H3BSU7 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TMX2-CTNND1H3BSU7 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC19.32■□□□□ 0.68
TMX2-CTNND1H3BSU7 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TMX2-CTNND1H3BSU7 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC19.32■□□□□ 0.68
TMX2-CTNND1H3BSU7 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC19.32■□□□□ 0.68
TMX2-CTNND1H3BSU7 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC19.32■□□□□ 0.68
TMX2-CTNND1H3BSU7 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
TMX2-CTNND1H3BSU7 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC19.32■□□□□ 0.68
TMX2-CTNND1H3BSU7 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC19.32■□□□□ 0.68
TMX2-CTNND1H3BSU7 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TMX2-CTNND1H3BSU7 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TMX2-CTNND1H3BSU7 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TMX2-CTNND1H3BSU7 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TMX2-CTNND1H3BSU7 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TMX2-CTNND1H3BSU7 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TMX2-CTNND1H3BSU7 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC19.31■□□□□ 0.68
TMX2-CTNND1H3BSU7 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC19.31■□□□□ 0.68
TMX2-CTNND1H3BSU7 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms