Protein–RNA interactions for Protein: A0A0B4J268

TRAV4, T-cell receptor alpha variable 4 (Fragment), humanhuman

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV4A0A0B4J268 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
TRAV4A0A0B4J268 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
TRAV4A0A0B4J268 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
TRAV4A0A0B4J268 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
TRAV4A0A0B4J268 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC14.21□□□□□ -0.13
TRAV4A0A0B4J268 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC14.21□□□□□ -0.13
TRAV4A0A0B4J268 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
TRAV4A0A0B4J268 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
TRAV4A0A0B4J268 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
TRAV4A0A0B4J268 CDCA4P2-201ENST00000441182 718 ntBASIC14.21□□□□□ -0.13
TRAV4A0A0B4J268 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC14.21□□□□□ -0.13
TRAV4A0A0B4J268 AC105036.2-201ENST00000569468 176 ntBASIC14.21□□□□□ -0.13
TRAV4A0A0B4J268 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC14.21□□□□□ -0.13
TRAV4A0A0B4J268 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC14.21□□□□□ -0.13
TRAV4A0A0B4J268 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC14.21□□□□□ -0.13
TRAV4A0A0B4J268 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC14.21□□□□□ -0.13
TRAV4A0A0B4J268 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
TRAV4A0A0B4J268 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
TRAV4A0A0B4J268 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
TRAV4A0A0B4J268 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
TRAV4A0A0B4J268 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
TRAV4A0A0B4J268 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC14.21□□□□□ -0.14
TRAV4A0A0B4J268 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
TRAV4A0A0B4J268 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
TRAV4A0A0B4J268 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
TRAV4A0A0B4J268 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
TRAV4A0A0B4J268 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
TRAV4A0A0B4J268 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
TRAV4A0A0B4J268 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
TRAV4A0A0B4J268 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
TRAV4A0A0B4J268 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
TRAV4A0A0B4J268 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
TRAV4A0A0B4J268 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC14.2□□□□□ -0.14
TRAV4A0A0B4J268 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC14.2□□□□□ -0.14
TRAV4A0A0B4J268 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC14.2□□□□□ -0.14
TRAV4A0A0B4J268 MIR663A-201ENST00000385250 93 ntBASIC14.2□□□□□ -0.14
TRAV4A0A0B4J268 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC14.2□□□□□ -0.14
TRAV4A0A0B4J268 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC14.2□□□□□ -0.14
TRAV4A0A0B4J268 VPS53-216ENST00000574029 585 ntTSL 4 BASIC14.2□□□□□ -0.14
TRAV4A0A0B4J268 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
TRAV4A0A0B4J268 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
TRAV4A0A0B4J268 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
TRAV4A0A0B4J268 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
TRAV4A0A0B4J268 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
TRAV4A0A0B4J268 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
TRAV4A0A0B4J268 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
TRAV4A0A0B4J268 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
TRAV4A0A0B4J268 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
TRAV4A0A0B4J268 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
TRAV4A0A0B4J268 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
TRAV4A0A0B4J268 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
TRAV4A0A0B4J268 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
TRAV4A0A0B4J268 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC14.19□□□□□ -0.14
TRAV4A0A0B4J268 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
TRAV4A0A0B4J268 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC14.19□□□□□ -0.14
TRAV4A0A0B4J268 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC14.19□□□□□ -0.14
TRAV4A0A0B4J268 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
TRAV4A0A0B4J268 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
TRAV4A0A0B4J268 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
TRAV4A0A0B4J268 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC14.19□□□□□ -0.14
TRAV4A0A0B4J268 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
TRAV4A0A0B4J268 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
TRAV4A0A0B4J268 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
TRAV4A0A0B4J268 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
TRAV4A0A0B4J268 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
TRAV4A0A0B4J268 SERPINH1P1-201ENST00000419794 1249 ntBASIC14.19□□□□□ -0.14
TRAV4A0A0B4J268 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC14.19□□□□□ -0.14
TRAV4A0A0B4J268 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC14.19□□□□□ -0.14
TRAV4A0A0B4J268 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC14.19□□□□□ -0.14
TRAV4A0A0B4J268 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC14.19□□□□□ -0.14
TRAV4A0A0B4J268 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
TRAV4A0A0B4J268 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC14.19□□□□□ -0.14
TRAV4A0A0B4J268 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC14.19□□□□□ -0.14
TRAV4A0A0B4J268 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC14.19□□□□□ -0.14
TRAV4A0A0B4J268 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
TRAV4A0A0B4J268 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
TRAV4A0A0B4J268 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC14.19□□□□□ -0.14
TRAV4A0A0B4J268 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
TRAV4A0A0B4J268 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
TRAV4A0A0B4J268 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
TRAV4A0A0B4J268 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
TRAV4A0A0B4J268 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
TRAV4A0A0B4J268 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
TRAV4A0A0B4J268 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
TRAV4A0A0B4J268 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
TRAV4A0A0B4J268 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC14.19□□□□□ -0.14
TRAV4A0A0B4J268 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
TRAV4A0A0B4J268 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
TRAV4A0A0B4J268 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
TRAV4A0A0B4J268 AC009237.14-201ENST00000609975 1594 ntBASIC14.18□□□□□ -0.14
TRAV4A0A0B4J268 AP001271.2-201ENST00000624018 1556 ntBASIC14.18□□□□□ -0.14
TRAV4A0A0B4J268 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
TRAV4A0A0B4J268 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
TRAV4A0A0B4J268 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
TRAV4A0A0B4J268 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
TRAV4A0A0B4J268 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
TRAV4A0A0B4J268 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
TRAV4A0A0B4J268 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
TRAV4A0A0B4J268 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC14.18□□□□□ -0.14
TRAV4A0A0B4J268 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC14.18□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms