Protein–RNA interactions for Protein: A0A0B4J244

TRAV3, T-cell receptor alpha variable 3 (gene/pseudogene) (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV3A0A0B4J244 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC15.86■□□□□ 0.13
TRAV3A0A0B4J244 PTGES2-AS1-201ENST00000443493 2100 ntBASIC15.86■□□□□ 0.13
TRAV3A0A0B4J244 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
TRAV3A0A0B4J244 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
TRAV3A0A0B4J244 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC15.86■□□□□ 0.13
TRAV3A0A0B4J244 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
TRAV3A0A0B4J244 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRAV3A0A0B4J244 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRAV3A0A0B4J244 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
TRAV3A0A0B4J244 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRAV3A0A0B4J244 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRAV3A0A0B4J244 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
TRAV3A0A0B4J244 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC15.86■□□□□ 0.13
TRAV3A0A0B4J244 AC022517.1-201ENST00000592429 346 ntBASIC15.86■□□□□ 0.13
TRAV3A0A0B4J244 AC005181.1-201ENST00000604782 1256 ntBASIC15.86■□□□□ 0.13
TRAV3A0A0B4J244 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC15.86■□□□□ 0.13
TRAV3A0A0B4J244 AC120498.9-201ENST00000339021 3867 ntBASIC15.86■□□□□ 0.13
TRAV3A0A0B4J244 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRAV3A0A0B4J244 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
TRAV3A0A0B4J244 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
TRAV3A0A0B4J244 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRAV3A0A0B4J244 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC15.86■□□□□ 0.13
TRAV3A0A0B4J244 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
TRAV3A0A0B4J244 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRAV3A0A0B4J244 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRAV3A0A0B4J244 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRAV3A0A0B4J244 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
TRAV3A0A0B4J244 AL032819.2-201ENST00000624543 2162 ntBASIC15.86■□□□□ 0.13
TRAV3A0A0B4J244 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
TRAV3A0A0B4J244 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC15.86■□□□□ 0.13
TRAV3A0A0B4J244 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
TRAV3A0A0B4J244 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC15.86■□□□□ 0.13
TRAV3A0A0B4J244 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
TRAV3A0A0B4J244 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
TRAV3A0A0B4J244 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
TRAV3A0A0B4J244 TNXA-203ENST00000507684 2038 ntBASIC15.85■□□□□ 0.13
TRAV3A0A0B4J244 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
TRAV3A0A0B4J244 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
TRAV3A0A0B4J244 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
TRAV3A0A0B4J244 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC15.85■□□□□ 0.13
TRAV3A0A0B4J244 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
TRAV3A0A0B4J244 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC15.85■□□□□ 0.13
TRAV3A0A0B4J244 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
TRAV3A0A0B4J244 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
TRAV3A0A0B4J244 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
TRAV3A0A0B4J244 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC15.85■□□□□ 0.13
TRAV3A0A0B4J244 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
TRAV3A0A0B4J244 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC15.85■□□□□ 0.13
TRAV3A0A0B4J244 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC15.85■□□□□ 0.13
TRAV3A0A0B4J244 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC15.85■□□□□ 0.13
TRAV3A0A0B4J244 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
TRAV3A0A0B4J244 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC15.85■□□□□ 0.13
TRAV3A0A0B4J244 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
TRAV3A0A0B4J244 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
TRAV3A0A0B4J244 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC15.85■□□□□ 0.13
TRAV3A0A0B4J244 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
TRAV3A0A0B4J244 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC15.85■□□□□ 0.13
TRAV3A0A0B4J244 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
TRAV3A0A0B4J244 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
TRAV3A0A0B4J244 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
TRAV3A0A0B4J244 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC15.84■□□□□ 0.13
TRAV3A0A0B4J244 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
TRAV3A0A0B4J244 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC15.84■□□□□ 0.13
TRAV3A0A0B4J244 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
TRAV3A0A0B4J244 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
TRAV3A0A0B4J244 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
TRAV3A0A0B4J244 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
TRAV3A0A0B4J244 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC15.84■□□□□ 0.13
TRAV3A0A0B4J244 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
TRAV3A0A0B4J244 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
TRAV3A0A0B4J244 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC15.84■□□□□ 0.13
TRAV3A0A0B4J244 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
TRAV3A0A0B4J244 AL512625.2-201ENST00000417533 625 ntBASIC15.84■□□□□ 0.13
TRAV3A0A0B4J244 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC15.84■□□□□ 0.13
TRAV3A0A0B4J244 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
TRAV3A0A0B4J244 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC15.84■□□□□ 0.13
TRAV3A0A0B4J244 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC15.84■□□□□ 0.13
TRAV3A0A0B4J244 AC023632.3-201ENST00000521633 145 ntBASIC15.84■□□□□ 0.13
TRAV3A0A0B4J244 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
TRAV3A0A0B4J244 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC15.84■□□□□ 0.13
TRAV3A0A0B4J244 MIR5787-201ENST00000611784 55 ntBASIC15.84■□□□□ 0.13
TRAV3A0A0B4J244 MDK-213ENST00000617138 635 ntTSL 2 BASIC15.84■□□□□ 0.13
TRAV3A0A0B4J244 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC15.84■□□□□ 0.13
TRAV3A0A0B4J244 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.13
TRAV3A0A0B4J244 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
TRAV3A0A0B4J244 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
TRAV3A0A0B4J244 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
TRAV3A0A0B4J244 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
TRAV3A0A0B4J244 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC15.84■□□□□ 0.13
TRAV3A0A0B4J244 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
TRAV3A0A0B4J244 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
TRAV3A0A0B4J244 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC15.83■□□□□ 0.13
TRAV3A0A0B4J244 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.13
TRAV3A0A0B4J244 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.13
TRAV3A0A0B4J244 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
TRAV3A0A0B4J244 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC15.83■□□□□ 0.13
TRAV3A0A0B4J244 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC15.83■□□□□ 0.13
TRAV3A0A0B4J244 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC15.83■□□□□ 0.13
TRAV3A0A0B4J244 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
TRAV3A0A0B4J244 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms