Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 NLRP3P1-201ENST00000622303 1785 ntBASIC10.08□□□□□ -0.8
CUX2O14529 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
CUX2O14529 AP001636.3-201ENST00000533954 2810 ntTSL 2 BASIC10.08□□□□□ -0.8
CUX2O14529 NBPF11-204ENST00000614785 4343 ntAPPRIS ALT2 TSL 5 BASIC10.08□□□□□ -0.8
CUX2O14529 CHRM3-201ENST00000255380 8780 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
CUX2O14529 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC10.08□□□□□ -0.8
CUX2O14529 TEX38-202ENST00000415500 566 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
CUX2O14529 LDHBP2-201ENST00000456969 1005 ntBASIC10.08□□□□□ -0.8
CUX2O14529 RPS18P6-201ENST00000476880 458 ntBASIC10.08□□□□□ -0.8
CUX2O14529 AC092916.1-201ENST00000497896 411 ntTSL 3 BASIC10.08□□□□□ -0.8
CUX2O14529 SNRPCP2-201ENST00000504370 475 ntBASIC10.08□□□□□ -0.8
CUX2O14529 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC10.08□□□□□ -0.8
CUX2O14529 LGALS8-217ENST00000525042 903 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
CUX2O14529 TNFRSF17-201ENST00000053243 994 ntAPPRIS P2 TSL 1 (best) BASIC10.08□□□□□ -0.8
CUX2O14529 AC022075.3-201ENST00000539009 649 ntTSL 3 BASIC10.08□□□□□ -0.8
CUX2O14529 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC10.08□□□□□ -0.8
CUX2O14529 TTN-AS1-219ENST00000586707 834 ntTSL 5 BASIC10.08□□□□□ -0.8
CUX2O14529 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC10.08□□□□□ -0.8
CUX2O14529 SCN9A-202ENST00000409435 5967 ntAPPRIS ALT1 TSL 5 BASIC10.08□□□□□ -0.8
CUX2O14529 TMEM68-219ENST00000617977 4512 ntTSL 5 BASIC10.08□□□□□ -0.8
CUX2O14529 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC10.08□□□□□ -0.8
CUX2O14529 NFIB-218ENST00000636432 1953 ntTSL 5 BASIC10.08□□□□□ -0.8
CUX2O14529 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
CUX2O14529 PSEN1-201ENST00000324501 6078 ntAPPRIS P4 TSL 1 (best) BASIC10.08□□□□□ -0.8
CUX2O14529 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
CUX2O14529 KAT7-201ENST00000259021 9644 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
CUX2O14529 NPIPB8-202ENST00000529716 2058 ntAPPRIS P1 TSL 5 BASIC10.08□□□□□ -0.8
CUX2O14529 CERS3-203ENST00000538112 1856 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
CUX2O14529 AC025263.1-201ENST00000501387 2538 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
CUX2O14529 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC10.07□□□□□ -0.8
CUX2O14529 AL591848.4-201ENST00000567832 3472 ntBASIC10.07□□□□□ -0.8
CUX2O14529 AL133243.4-201ENST00000623116 3109 ntBASIC10.07□□□□□ -0.8
CUX2O14529 PROX1-203ENST00000435016 3075 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
CUX2O14529 AC092807.3-203ENST00000467530 2745 ntTSL 2 BASIC10.07□□□□□ -0.8
CUX2O14529 CBFA2T2-209ENST00000492345 7803 ntTSL 5 BASIC10.07□□□□□ -0.8
CUX2O14529 RTL9-201ENST00000465301 5426 ntAPPRIS P2 TSL 1 (best) BASIC10.07□□□□□ -0.8
CUX2O14529 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC10.07□□□□□ -0.8
CUX2O14529 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC10.07□□□□□ -0.8
CUX2O14529 RNU6ATAC7P-201ENST00000408111 127 ntBASIC10.07□□□□□ -0.8
CUX2O14529 RN7SKP29-201ENST00000410957 272 ntBASIC10.07□□□□□ -0.8
CUX2O14529 AL390774.1-201ENST00000411924 246 ntBASIC10.07□□□□□ -0.8
CUX2O14529 SLC8A1-AS1-202ENST00000417875 344 ntTSL 2 BASIC10.07□□□□□ -0.8
CUX2O14529 ATP13A4-AS1-202ENST00000431512 394 ntTSL 3 BASIC10.07□□□□□ -0.8
CUX2O14529 AL133465.1-201ENST00000432942 512 ntTSL 3 BASIC10.07□□□□□ -0.8
CUX2O14529 IKZF3-212ENST00000439016 1246 ntTSL 5 BASIC10.07□□□□□ -0.8
CUX2O14529 AC092941.2-201ENST00000444379 1008 ntTSL 3 BASIC10.07□□□□□ -0.8
CUX2O14529 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC10.07□□□□□ -0.8
CUX2O14529 LINC01476-202ENST00000584262 635 ntTSL 4 BASIC10.07□□□□□ -0.8
CUX2O14529 AC011443.1-201ENST00000599484 365 ntTSL 3 BASIC10.07□□□□□ -0.8
CUX2O14529 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC10.07□□□□□ -0.8
CUX2O14529 KAT6A-203ENST00000406337 9241 ntAPPRIS P3 TSL 5 BASIC10.07□□□□□ -0.8
CUX2O14529 SELE-203ENST00000367775 3389 ntTSL 5 BASIC10.07□□□□□ -0.8
CUX2O14529 C5orf51-204ENST00000612065 1391 ntTSL 5 BASIC10.07□□□□□ -0.8
CUX2O14529 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
CUX2O14529 AC105235.1-201ENST00000623208 1816 ntBASIC10.07□□□□□ -0.8
CUX2O14529 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC10.07□□□□□ -0.8
CUX2O14529 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC10.07□□□□□ -0.8
CUX2O14529 IL1RL1-202ENST00000311734 3994 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
CUX2O14529 DPH5-203ENST00000370109 1316 ntAPPRIS P4 TSL 1 (best) BASIC10.06□□□□□ -0.8
CUX2O14529 HSPG2-203ENST00000374695 14327 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
CUX2O14529 EIF4A2-205ENST00000440191 1889 ntAPPRIS ALT1 TSL 1 (best) BASIC10.06□□□□□ -0.8
CUX2O14529 ALB-219ENST00000621085 1418 ntTSL 5 BASIC10.06□□□□□ -0.8
CUX2O14529 SVIL-202ENST00000375398 8201 ntAPPRIS ALT2 TSL 5 BASIC10.06□□□□□ -0.8
CUX2O14529 SIRPD-201ENST00000381621 823 ntAPPRIS ALT2 TSL 3 BASIC10.06□□□□□ -0.8
CUX2O14529 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC10.06□□□□□ -0.8
CUX2O14529 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC10.06□□□□□ -0.8
CUX2O14529 CD200R1L-202ENST00000448932 750 ntAPPRIS ALT2 TSL 5 BASIC10.06□□□□□ -0.8
CUX2O14529 ZNF331-203ENST00000449416 3817 ntAPPRIS P1 TSL 5 BASIC10.06□□□□□ -0.8
CUX2O14529 MGAT2P1-201ENST00000449718 797 ntBASIC10.06□□□□□ -0.8
CUX2O14529 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC10.06□□□□□ -0.8
CUX2O14529 IGKV2D-10-201ENST00000520194 281 ntBASIC10.06□□□□□ -0.8
CUX2O14529 AC025031.1-201ENST00000552634 562 ntTSL 4 BASIC10.06□□□□□ -0.8
CUX2O14529 ZNF549-204ENST00000602149 5505 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
CUX2O14529 MTMR7-201ENST00000180173 3850 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
CUX2O14529 LINC02092-201ENST00000455366 2472 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
CUX2O14529 SALL4P7-201ENST00000555779 3120 ntBASIC10.06□□□□□ -0.8
CUX2O14529 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC10.06□□□□□ -0.8
CUX2O14529 ARPP21-201ENST00000187397 3433 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
CUX2O14529 ZNF329-204ENST00000598312 3410 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
CUX2O14529 ATP10B-202ENST00000327245 7566 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
CUX2O14529 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC10.05□□□□□ -0.8
CUX2O14529 ADTRP-203ENST00000414691 2058 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
CUX2O14529 ATXN3-204ENST00000429774 6713 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
CUX2O14529 SOX6-202ENST00000396356 8865 ntAPPRIS P3 TSL 1 (best) BASIC10.05□□□□□ -0.8
CUX2O14529 NRXN1-248ENST00000636345 3595 ntTSL 5 BASIC10.05□□□□□ -0.8
CUX2O14529 OR5H1-201ENST00000354565 942 ntAPPRIS P1 BASIC10.05□□□□□ -0.8
CUX2O14529 RNU1-77P-201ENST00000390868 162 ntBASIC10.05□□□□□ -0.8
CUX2O14529 RNU11-6P-201ENST00000391127 133 ntBASIC10.05□□□□□ -0.8
CUX2O14529 GAPDHP42-201ENST00000406848 981 ntBASIC10.05□□□□□ -0.8
CUX2O14529 U3.36-201ENST00000408418 213 ntBASIC10.05□□□□□ -0.8
CUX2O14529 CYP4F30P-202ENST00000420048 405 ntBASIC10.05□□□□□ -0.8
CUX2O14529 CCNB1IP1P1-201ENST00000428976 839 ntBASIC10.05□□□□□ -0.8
CUX2O14529 AL450023.1-201ENST00000450868 751 ntBASIC10.05□□□□□ -0.8
CUX2O14529 RPL7AP28-201ENST00000464513 571 ntBASIC10.05□□□□□ -0.8
CUX2O14529 AC073288.1-201ENST00000466291 469 ntTSL 3 BASIC10.05□□□□□ -0.8
CUX2O14529 RPEP1-201ENST00000504507 658 ntBASIC10.05□□□□□ -0.8
CUX2O14529 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC10.05□□□□□ -0.8
CUX2O14529 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC10.05□□□□□ -0.8
CUX2O14529 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC10.05□□□□□ -0.8
CUX2O14529 AL020997.2-201ENST00000602607 184 ntBASIC10.05□□□□□ -0.8
Retrieved 100 of 98,524 protein–RNA pairs in 99.8 ms