Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 LRRC36-202ENST00000435835 1765 ntTSL 2 BASIC7.19□□□□□ -1.26
COL5A3P25940 LIN7A-204ENST00000552864 6112 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
COL5A3P25940 CTNND1-234ENST00000532844 6012 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
COL5A3P25940 LINC01958-201ENST00000637749 1941 ntTSL 5 BASIC7.19□□□□□ -1.26
COL5A3P25940 EPHA1-AS1-202ENST00000429289 5018 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
COL5A3P25940 OR5B12-201ENST00000302572 1054 ntAPPRIS P1 BASIC7.18□□□□□ -1.26
COL5A3P25940 RNA5SP319-201ENST00000362768 119 ntBASIC7.18□□□□□ -1.26
COL5A3P25940 CENPW-203ENST00000368328 750 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
COL5A3P25940 AC079841.1-201ENST00000481228 950 ntBASIC7.18□□□□□ -1.26
COL5A3P25940 AC004453.1-201ENST00000487895 408 ntBASIC7.18□□□□□ -1.26
COL5A3P25940 IGLV2-34-201ENST00000490007 283 ntBASIC7.18□□□□□ -1.26
COL5A3P25940 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC7.18□□□□□ -1.26
COL5A3P25940 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC7.18□□□□□ -1.26
COL5A3P25940 AC073342.3-201ENST00000624211 193 ntBASIC7.18□□□□□ -1.26
COL5A3P25940 LAMTOR5-AS1-233ENST00000625451 470 ntTSL 5 BASIC7.18□□□□□ -1.26
COL5A3P25940 MYO10-201ENST00000274203 11456 ntAPPRIS ALT2 TSL 5 BASIC7.18□□□□□ -1.26
COL5A3P25940 ATP2C1-203ENST00000422190 3386 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
COL5A3P25940 NR5A2-203ENST00000367362 5086 ntAPPRIS P3 TSL 1 (best) BASIC7.18□□□□□ -1.26
COL5A3P25940 FAM186A-204ENST00000543111 8200 ntAPPRIS ALT2 TSL 5 BASIC7.18□□□□□ -1.26
COL5A3P25940 RABGEF1-202ENST00000380828 3864 ntTSL 2 BASIC7.18□□□□□ -1.26
COL5A3P25940 ALG13-202ENST00000371979 2770 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
COL5A3P25940 LYRM4-201ENST00000330636 7312 ntAPPRIS P3 TSL 1 (best) BASIC7.18□□□□□ -1.26
COL5A3P25940 HTR4-206ENST00000520086 2272 ntTSL 2 BASIC7.18□□□□□ -1.26
COL5A3P25940 RASGEF1B-203ENST00000436139 6323 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
COL5A3P25940 ARNTL2-207ENST00000542388 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC7.18□□□□□ -1.26
COL5A3P25940 AL359551.1-201ENST00000442726 2900 ntTSL 2 BASIC7.18□□□□□ -1.26
COL5A3P25940 VTI1A-201ENST00000393077 4131 ntAPPRIS P1 TSL 2 BASIC7.18□□□□□ -1.26
COL5A3P25940 PCDH19-201ENST00000255531 7937 ntAPPRIS P3 TSL 1 (best) BASIC7.18□□□□□ -1.26
COL5A3P25940 MLLT3-203ENST00000380338 6772 ntAPPRIS P3 TSL 1 (best) BASIC7.18□□□□□ -1.26
COL5A3P25940 GOLGB1-202ENST00000393667 11198 ntAPPRIS ALT2 TSL 1 (best) BASIC7.18□□□□□ -1.26
COL5A3P25940 NEK11-201ENST00000356918 1874 ntAPPRIS ALT2 TSL 5 BASIC7.18□□□□□ -1.26
COL5A3P25940 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC7.18□□□□□ -1.26
COL5A3P25940 CPED1-206ENST00000450913 2501 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
COL5A3P25940 SNORA16A-201ENST00000384342 137 ntBASIC7.18□□□□□ -1.26
COL5A3P25940 KCNJ13-202ENST00000409779 1099 ntTSL 2 BASIC7.18□□□□□ -1.26
COL5A3P25940 LINC01687-201ENST00000416327 795 ntTSL 3 BASIC7.18□□□□□ -1.26
COL5A3P25940 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC7.18□□□□□ -1.26
COL5A3P25940 AL731534.1-201ENST00000434711 269 ntBASIC7.18□□□□□ -1.26
COL5A3P25940 AL389915.2-201ENST00000454576 441 ntBASIC7.18□□□□□ -1.26
COL5A3P25940 RNU1-88P-201ENST00000459274 128 ntBASIC7.18□□□□□ -1.26
COL5A3P25940 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC7.18□□□□□ -1.26
COL5A3P25940 AC074255.1-201ENST00000511259 501 ntBASIC7.18□□□□□ -1.26
COL5A3P25940 AC092593.2-201ENST00000513866 913 ntBASIC7.18□□□□□ -1.26
COL5A3P25940 BMPR1APS2-201ENST00000527904 1012 ntBASIC7.18□□□□□ -1.26
COL5A3P25940 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC7.18□□□□□ -1.26
COL5A3P25940 CDC42EP3P1-201ENST00000601004 764 ntBASIC7.18□□□□□ -1.26
COL5A3P25940 AC090527.3-201ENST00000619041 548 ntBASIC7.18□□□□□ -1.26
COL5A3P25940 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC7.18□□□□□ -1.26
COL5A3P25940 MYLK4-201ENST00000274643 5806 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
COL5A3P25940 AC022893.2-201ENST00000564832 3296 ntBASIC7.18□□□□□ -1.26
COL5A3P25940 AL357153.1-201ENST00000500016 2941 ntTSL 2 BASIC7.18□□□□□ -1.26
COL5A3P25940 KIAA0391-209ENST00000604948 1706 ntAPPRIS ALT2 TSL 2 BASIC7.17□□□□□ -1.26
COL5A3P25940 UNC79-206ENST00000621021 7377 ntAPPRIS P2 TSL 5 BASIC7.17□□□□□ -1.26
COL5A3P25940 TNKS-206ENST00000518281 3897 ntTSL 2 BASIC7.17□□□□□ -1.26
COL5A3P25940 TNRC6A-201ENST00000315183 8303 ntAPPRIS ALT2 TSL 5 BASIC7.17□□□□□ -1.26
COL5A3P25940 NIPBL-201ENST00000282516 10435 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
COL5A3P25940 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC7.17□□□□□ -1.26
COL5A3P25940 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
COL5A3P25940 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC7.17□□□□□ -1.26
COL5A3P25940 FGFR2-205ENST00000357555 3690 ntTSL 2 BASIC7.17□□□□□ -1.26
COL5A3P25940 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC7.17□□□□□ -1.26
COL5A3P25940 DUTP5-201ENST00000406790 469 ntBASIC7.17□□□□□ -1.26
COL5A3P25940 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC7.17□□□□□ -1.26
COL5A3P25940 LINC01820-201ENST00000418415 570 ntTSL 2 BASIC7.17□□□□□ -1.26
COL5A3P25940 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC7.17□□□□□ -1.26
COL5A3P25940 VN1R54P-201ENST00000435210 1049 ntBASIC7.17□□□□□ -1.26
COL5A3P25940 RPL7P61-201ENST00000451721 751 ntBASIC7.17□□□□□ -1.26
COL5A3P25940 AC018709.1-201ENST00000509111 700 ntAPPRIS P1 TSL 3 BASIC7.17□□□□□ -1.26
COL5A3P25940 AC078820.1-201ENST00000548702 742 ntTSL 3 BASIC7.17□□□□□ -1.26
COL5A3P25940 ETFRF1-202ENST00000553788 708 ntTSL 3 BASIC7.17□□□□□ -1.26
COL5A3P25940 CASC22-201ENST00000569713 386 ntTSL 5 BASIC7.17□□□□□ -1.26
COL5A3P25940 OPCML-203ENST00000524381 6424 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
COL5A3P25940 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
COL5A3P25940 CAPRIN1-209ENST00000530820 3454 ntAPPRIS ALT2 TSL 5 BASIC7.17□□□□□ -1.26
COL5A3P25940 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC7.17□□□□□ -1.26
COL5A3P25940 CAPS2-205ENST00000409445 2135 ntTSL 2 BASIC7.17□□□□□ -1.26
COL5A3P25940 FSD2-201ENST00000334574 6418 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
COL5A3P25940 GAN-202ENST00000568107 15244 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
COL5A3P25940 GRIN2A-202ENST00000396573 14450 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
COL5A3P25940 MFSD8-239ENST00000641590 2479 ntBASIC7.17□□□□□ -1.26
COL5A3P25940 HMGB4-204ENST00000522796 2505 ntAPPRIS P1 TSL 5 BASIC7.17□□□□□ -1.26
COL5A3P25940 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
COL5A3P25940 EIF3F-208ENST00000533626 7540 ntAPPRIS P1 TSL 2 BASIC7.16□□□□□ -1.26
COL5A3P25940 CTNND1-222ENST00000529919 4780 ntTSL 5 BASIC7.16□□□□□ -1.26
COL5A3P25940 NUP155-201ENST00000231498 8143 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
COL5A3P25940 WASHC4-202ENST00000332180 5812 ntAPPRIS P3 TSL 1 (best) BASIC7.16□□□□□ -1.26
COL5A3P25940 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC7.16□□□□□ -1.26
COL5A3P25940 AC007568.1-201ENST00000422912 471 ntBASIC7.16□□□□□ -1.26
COL5A3P25940 Z80107.2-201ENST00000445127 392 ntBASIC7.16□□□□□ -1.26
COL5A3P25940 GABRR1-203ENST00000454853 2820 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
COL5A3P25940 RPL7P39-201ENST00000481157 744 ntBASIC7.16□□□□□ -1.26
COL5A3P25940 CSNK1A1P3-201ENST00000504105 330 ntBASIC7.16□□□□□ -1.26
COL5A3P25940 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC7.16□□□□□ -1.26
COL5A3P25940 ADAM7-204ENST00000520720 1870 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
COL5A3P25940 AC092821.2-201ENST00000545710 2042 ntBASIC7.16□□□□□ -1.26
COL5A3P25940 BLZF2P-201ENST00000553776 1130 ntBASIC7.16□□□□□ -1.26
COL5A3P25940 DPPA3P2-202ENST00000557188 1219 ntBASIC7.16□□□□□ -1.26
COL5A3P25940 AC104066.2-201ENST00000564513 1741 ntTSL 3 BASIC7.16□□□□□ -1.26
COL5A3P25940 AC069307.1-201ENST00000602820 447 ntBASIC7.16□□□□□ -1.26
COL5A3P25940 AC087763.1-201ENST00000603391 286 ntBASIC7.16□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 127.7 ms